Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01260 ATGGCCTCTTCTAGCTACTCTAATTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGCATGCCTGATTGCATTTTTGCTCCATATTTCCCACCAGAAGAACCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGTAAACTTCTCAATGAAGTCCAACCCCATCAAAGGGAGGATGCAGTGAACTCTCTGGCCTATGAAGCCGAGGCAAGGATAAAAGATCCAGTTTATGGTTGTGTTGGGGCCATATCAGTGCTCCAAAGGCAAGTCATTAGGCTCCAAAAGGAACTAGATACAACAAATGCAGATTTGATCCGCTATACCTGCAGTGAAATGCCAACTACTCAAGATGCCAGAAGGATGGGTGAAGGGGGAGGTTCGTCTCTTGCTCAATCTCCTGGTTTTTATTATCCTTCTCCTTGGAACAATGATCCACTTGGGGATGGTTATCACAGAGGAGGTGACAATAATATGTGA 495 0.4444 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDTTNADLIRYTCSEMPTTQDARRMGEGGGSSLAQSPGFYYPSPWNNDPLGDGYHRGGDNNM* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01260 164 MobiDBLite consensus disorder prediction 121 140 - -
Rops8g01260 164 Coils Coil 89 109 - -
Rops8g01260 164 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Rops8g01260 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 118 - -
Rops8g01260 164 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01260 Rops-Chr8 27569007 27569501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01260 4 113 AS2 family AT3G27650 85.455 7.12e-70 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops8g01260 LOB 7.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01260 - - gmx:100306630 316.235