Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01241 ATGAATATGATGCGAAGGTTGAAAAGCATTGCTTCTGGGAGGACTTCCATTTCATCAGATCCTGGAGGGGATTCTTTCACCAAAAGAGCTAAATTTGATCAACAGACTGAAGAAAAGATGAATGTGGAAACAAATCCTGTTGAGAGAGGTGGCAAAGATCAAGAGCAGCATGTAGATGCATCCAAAGAAACTACTGCTGTCACACTTAATTCCAATGTTTCTACACTGGCTAGAACTGAGAAGTCAGGTTATGATCAGCTTCCAAAAGAATTACATGAAATGAAAATTAGAGATGATAAAGCGAAAAACAACAATGAAAAGGATATGGAGACAACTATTGTGAATGGTAATGGAACAGAAACGGGTCAAATAATTACGACTGCCATTGGTGGTCGAGATGGACAACCGAAGCGGACAATCTCATACATGGCAGAACGTGTGGTTGGTACTGGTTCTTTCGGTGTTGTTTATCAGGCTAAGTGCCTTGAAACCGGTGAAGCGGTTGCAATAAAGAAAGTCTTGCAAGACAAGAGATATAAAAATAGGGAACTCCAGGTCATGCGTATGCTGGACCATACTAATGTTCTTAAGCTAAAGCACTGTTTCTATTCAACGGCCGAAAAAGATGAGTTGTACCTTAACCTAGTTTTGGATTATGTACCTGAAACTGTCTACAGAGTTTCAAAGCACTATGTCAGGATGCACCAACATATGCCTATCATTTATATACAACTGTATACATACCAGATATGCCGTGGTTTAAATTATTTGCATCATGTGGTCGGAGTCTGTCATCGTGACATCAAACCCCAGAATCTGTTGGTTAATCCCCAGAGTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAAATGTTGGTGCCTGGCGAACCCAACATATCATACATATGCTCAAGGTATTATAGAGCTCCAGAACTTATATTTGGCGCAACAGAATACACAACTGCTATTGATATTTGGTCCGCTGGTTGTGTCTTGGCTGAGCTTCTTCTAGGACAGCCAATGTTTCCTGGAGAGAGTGGGATTGATCAGTTGGTAGAGATCATTAAGATTTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACTGAATTTAAGTTTCCTCAAATAAAAGCACACCCATGGCACAAGGTTTTCCACAAAAGGATGCCTCCTGAAGCAGTGGATCTTGTGTCAAGGATGCTTCAATATTCACCAAATCTACGTTGCACTGCTTTGGAAACATGTGCACACCTTCTTTGA 1278 0.4045 MNMMRRLKSIASGRTSISSDPGGDSFTKRAKFDQQTEEKMNVETNPVERGGKDQEQHVDASKETTAVTLNSNVSTLARTEKSGYDQLPKELHEMKIRDDKAKNNNEKDMETTIVNGNGTETGQIITTAIGGRDGQPKRTISYMAERVVGTGSFGVVYQAKCLETGEAVAIKKVLQDKRYKNRELQVMRMLDHTNVLKLKHCFYSTAEKDELYLNLVLDYVPETVYRVSKHYVRMHQHMPIIYIQLYTYQICRGLNYLHHVVGVCHRDIKPQNLLVNPQSHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGQPMFPGESGIDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKVFHKRMPPEAVDLVSRMLQYSPNLRCTALETCAHLL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01241 425 Pfam Protein kinase domain 142 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01241 425 FunFam Shaggy-related protein kinase kappa 222 425 - -
Rops8g01241 425 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 106 423 - -
Rops8g01241 425 Gene3D Transferase(Phosphotransferase) domain 1 222 425 - -
Rops8g01241 425 SMART serkin_6 142 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01241 425 MobiDBLite consensus disorder prediction 9 23 - -
Rops8g01241 425 ProSitePatterns Protein kinases ATP-binding region signature. 148 172 IPR017441 GO:0005524
Rops8g01241 425 CDD STKc_GSK3 137 423 IPR039192 -
Rops8g01241 425 MobiDBLite consensus disorder prediction 1 64 - -
Rops8g01241 425 FunFam Glycogen synthase kinase-3 beta 126 221 - -
Rops8g01241 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Rops8g01241 425 MobiDBLite consensus disorder prediction 26 60 - -
Rops8g01241 425 SUPERFAMILY Protein kinase-like (PK-like) 141 423 IPR011009 -
Rops8g01241 425 Gene3D Phosphorylase Kinase; domain 1 127 221 - -
Rops8g01241 425 ProSiteProfiles Protein kinase domain profile. 142 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01241 Rops-Chr8 26885611 26890012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01241 146 423 MAP Kinase Gene Family AT3G59790 34.266 1.65e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Rops8g01241 Pkinase 2.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01241 K00924 - gmx:100786458 778.089