Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01235 ATGAGTTTTGGGGGGTTTCTTGACAACAAGCAAGGTGGCGAAGGTGCTAAGATCATAGCAGATATTCCATATAGCAACGGTTCCAACCACAACAATAGCATCAGCAACGATAGAATGCCCTCTGGTGCAATTTCACAGCCTCGTTTAGCCACTCCTACTTTGAACAAATCTATGTTCAACTCACCTGGTCTCTCTTTGGCACTTCAAACTAATATAGATGGACAAGGGGATGTGAACAGATTAATGGCTGAGAATTTTGAACCAAATGGTTTGAGAAGGAACAGGGAAGAAGAGCATGAAAGTAGATCTGGGAGTGATAACATGGATGGTGCTTCTGGTGATGATTTTGATGCTGCCGACAATCCACCAAGGAAAAAACGTTATCACCGACACACTCCTCAACAAATACAAGAACTTGAAGCGCTGTTCAAGGAGTGCCCTCATCCTGATGAGAAGCAAAGGCTTGAACTGAGCAAAAGGCTTTGTTTGGAAACGAGGCAAGTGAAGTTTTGGTTCCAAAATCGAAGAACCCAAATGAAGACCCAATTGGAACGCCATGAGAACTCACTTCTTAGGCAAGAGAATGATAAGCTCAGAGCTGAGAACATGTCCTTAAGAGGAGCTATGAGGAATCCTATGTGTTCTAACTGTGGAGGTCCAGCTATTATTGGTGAGATTTCACTTGAAGAACAACATCTTAGGATTGAGAATGCTCGATTAAAGGATGAACTAGACCGAGTTTGTGCACTTGCTGGAAAGTTTTTGGGTCGCCCCATTCCTTCTATGACAAACTCAATTAGCCCTCCTTTGCCAAACTCTAGTTTGGAGCTTGGAGTTGGGAATAACGGTTTTGGTGGTTTGAACACTGTGCCTTCAACATTGCCTTTAGGTCCTGATTTTGGGGTGGGGATATCTAGCCCTTTAGGCATGGTGTCACCTACAACTAGACCAACAACAACTATGGTGACAACTGGCTTTGACAGATCAGTGGAGAGGTCTATGTTTCTAGAACTTGCTTTGGTTGCAATGGATGAGTTAGTGAAGATGGCTCAAACTGGGGAGCCTCTTTGGATCAGAAGTTTAGAAGGGGGAAGAGAGATTCTTAACCATGAGGAATACACAAGGACAATGACTCCTTGCATTGGCTTGAGACCCAATGGTTTTGTCTCTGAGGCTTCTAGAGAAACTGGCGTGGTCATCATAAACAGCTTGGCCCTTGTTGAGACTTTAATGGACTCAAATCGTTGGTCAGAGATGTTCCCTTGTATGATTGCAAGATCCTCAACAGCTGAAGTGATATCTAGTGGAATAAATGGAACCAGAAATGGTGCTCTTCAACTGATGCATGCTGAACTTCAAGTCCTTTCACCCTTGGTTCCTGTTCGTGAGGTCCATGTTCTACGCTTTTGCAAGCAGCACGCTGAAGGGGTGTGGGCTGTGGTAGATGTGTCTATAGATACCATCCGAGAAACTTCTGGTGCACCTACTTTTCTGAACTGCAGAAGGCTTCCTTCTGGTTGTGTGGTGCAAGATATGCCAAATGGTTACTCTAAGGTGACATGGGTGGAGCATGCAGAATACGACGAAAGCCAAGTCCACGAGCTATACAGGCCCTTGTTGAGGTCAGGCATGGGGTTTGGTGCACAACGTTGGGTTGCAATCCTTCAACGCCAATGTGAATGCCTAGCTATCTTGATGTCCTCAGCACTTCCCTCTAGAGACCACTCAGCAATAAGTGCGGGTGGAAGGCGTAGCATGTTGAAGTTGGCACAACGAATGACGAACAACTTCTGTGCTGGGGTTTGTGCATCGACGGTACACAAATGGAACAAGCTAAACAACAACGCGGGGAACGTGGGTGAGGACGTGAGGCTTATGACAAGAAAGAGTGTGGATGATCCTGGTGAGCCTCCTGGGGTGGTGCTAAGTGCAGCAACCTCGGTGTGGCTCCCAGTTTCACCACAAAGACTCTTCGATTTCCTCAGGGATGAAAGGCTCAGAAGTGAGTGGGACATACTCTCCAATGGTGGACCCATGCATGAGATGGCTCACATTGCCAAAGGACAAGACCATGCCAACTCTGTCTCCCTCCTTAGAGCCAGTGCTATGAATGCAAACCAGAGCAGCATGTTGATTCTGCAGGAGACATGTACAGACGCGTCAGGGTCGCTTGTAGTGTACGCTCCGGTAGACATCCCAGCCATGCACGTCGTGATGAACGGCGGCGACTCTGCTTACGTGGCGCTTCTTCCGTCGGGGTTCGCCATAGTGCCCGACGGACACGGCGACGATCACCGTGGCGCGTCGCAACCAAGGGCGAGTGGATCCCTCTTAACGGTGGCGTTTCAAATTCTCGTGAATAGCCTCCCAACGGCGAAACTCACGGTTGAGTCCGTTGAAACGGTTAACAACCTCATCAAGTGCACCGTTCAGAAGATAAAAGCAGCGCTTCAATGTGAGAGCTGA 2466 0.4761 MSFGGFLDNKQGGEGAKIIADIPYSNGSNHNNSISNDRMPSGAISQPRLATPTLNKSMFNSPGLSLALQTNIDGQGDVNRLMAENFEPNGLRRNREEEHESRSGSDNMDGASGDDFDAADNPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSLRGAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALAGKFLGRPIPSMTNSISPPLPNSSLELGVGNNGFGGLNTVPSTLPLGPDFGVGISSPLGMVSPTTRPTTTMVTTGFDRSVERSMFLELALVAMDELVKMAQTGEPLWIRSLEGGREILNHEEYTRTMTPCIGLRPNGFVSEASRETGVVIINSLALVETLMDSNRWSEMFPCMIARSSTAEVISSGINGTRNGALQLMHAELQVLSPLVPVREVHVLRFCKQHAEGVWAVVDVSIDTIRETSGAPTFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHELYRPLLRSGMGFGAQRWVAILQRQCECLAILMSSALPSRDHSAISAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNNNAGNVGEDVRLMTRKSVDDPGEPPGVVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMHEMAHIAKGQDHANSVSLLRASAMNANQSSMLILQETCTDASGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGHGDDHRGASQPRASGSLLTVAFQILVNSLPTAKLTVESVETVNNLIKCTVQKIKAALQCES* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01235 821 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 121 818 IPR042160 -
Rops8g01235 821 SMART START_1 337 561 IPR002913 GO:0008289
Rops8g01235 821 FunFam Homeobox-leucine zipper protein HDG1 112 198 - -
Rops8g01235 821 Pfam Homeodomain 125 180 IPR001356 GO:0003677
Rops8g01235 821 MobiDBLite consensus disorder prediction 89 105 - -
Rops8g01235 821 CDD homeodomain 124 182 IPR001356 GO:0003677
Rops8g01235 821 SMART HOX_1 123 186 IPR001356 GO:0003677
Rops8g01235 821 MobiDBLite consensus disorder prediction 29 48 - -
Rops8g01235 821 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Rops8g01235 821 SUPERFAMILY Bet v1-like 589 814 - -
Rops8g01235 821 SUPERFAMILY Homeodomain-like 108 182 IPR009057 -
Rops8g01235 821 Gene3D - 113 198 - -
Rops8g01235 821 SUPERFAMILY Bet v1-like 330 561 - -
Rops8g01235 821 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Rops8g01235 821 MobiDBLite consensus disorder prediction 85 132 - -
Rops8g01235 821 Pfam START domain 338 561 IPR002913 GO:0008289
Rops8g01235 821 Coils Coil 176 208 - -
Rops8g01235 821 ProSiteProfiles START domain profile. 328 564 IPR002913 GO:0008289
Rops8g01235 821 FunFam Homeobox-leucine zipper protein GLABRA 2 337 560 - -
Rops8g01235 821 CDD START_ArGLABRA2_like 332 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01235 Rops-Chr8 26769728 26776007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01235 1 821 Homeobox Transcription Factor Family AT3G61150 65.476 0.0 1051
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops8g01235 START 4.5e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01235 K09338 - gmx:100787537 1397.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01235 8 26769728 26776007 Rops8g01235 8 26769728 26776007 ECH