Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01232 ATGCAAGCAAAAGCACCCATATCAATCTTCCTCATGATGACACTTGAAGTTCAAGAACCTACCCTCTCCAATGGTGGTGGTGAATCTTGCAACGAAAACCATAAAGTATATGTGACAATGATTTCTATGGCATCATCGTCCAAGAATCAAATAAAACTTTGTCGCTTGGGGATACAAATTGGTCGTGACTCTTTAACTGACGAATCTTTTTGCAAGGATTTGATAAAGCCATTCCTTGTGGACTTGGATATACCACAAAGTTTCTACAATGGCCACGACTGTGACATGGTTGAAAACCTTTCAAGAATATTTGGTGCCTTGATTCTGAAGCACCCTGGATGTGATAACGAAGATTATATTTGTGTGTTCATCATGGTGTACCCCACTTGTTGTTTTTACAACGTAGTGAATTCCTCATGCTTCTTCCATGCTGAACAATCTCCATCAACTGAGTTGATACAAAGAATGGCTGTGGAGGGTGGTGAATCTTCTTTGCCTTCAGGGGCAAGTGCACTATTGAACGTTCCAACTAAAGAGGGTGATTACTGTGTTATATGCTTGCAAGGGTTCTCCTGTTATGCATTTAGGTTACCTTGTTCTCATGTGTTCCACTATGATTGTATTTTGGAATGGTTTGTGAAAAGTAGTACATGCCCTCTATGTCGCTCCCCATGTAATCATACCTTGTTACCATAA 696 0.4023 MQAKAPISIFLMMTLEVQEPTLSNGGGESCNENHKVYVTMISMASSSKNQIKLCRLGIQIGRDSLTDESFCKDLIKPFLVDLDIPQSFYNGHDCDMVENLSRIFGALILKHPGCDNEDYICVFIMVYPTCCFYNVVNSSCFFHAEQSPSTELIQRMAVEGGESSLPSGASALLNVPTKEGDYCVICLQGFSCYAFRLPCSHVFHYDCILEWFVKSSTCPLCRSPCNHTLLP* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01232 231 Pfam Ring finger domain 182 222 IPR001841 -
Rops8g01232 231 ProSiteProfiles Zinc finger RING-type profile. 183 222 IPR001841 -
Rops8g01232 231 SMART ring_2 183 221 IPR001841 -
Rops8g01232 231 SUPERFAMILY RING/U-box 176 226 - -
Rops8g01232 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 227 IPR013083 -
Rops8g01232 231 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 149 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01232 Rops-Chr8 26727828 26728523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01232 173 223 C3H Transcription Factor Family AT1G74620 46.296 5.56e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01232 - K22378 aprc:113862471 159.073