Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01231 ATGTCCCTTGAAGCTCAAGAACCCACCCACTCCAATGGTGGTGGTGACTCTTGCAACGACACCCATAGAGTACATATCAAAATGATTTCAGTGGCATCGTCATCATGGGAGCAAATAAAACTTTGCAGCTTGGAGTTACAAATTGGTCATGATTCTTTTACTGATGAATCTTTCTGCAAGGATTTGATAAAGCCATGCCTTGTGGACTTGGATATACCACAAGCTTACTACAATGGCCACGATTGTGACATGGTTGTTAAGCTTTCAAGAATGTTTCATGACTTGATGTTGCAGCGCCATGGATGTAATCATGAAGATTATATTTGTGTGTTTATCATTGTGTATCCGACTTGTTGTTTCTACAACTTGGTGAATTCCTCTTGCTACTTCCATGCTGAACAAATTCCATCAAGTGAGTTGATACAAAGAATGACTTGCGAGGGTGGTGAAACTTCTTTGCCTGCAGGGGCAAGTGCACTATTAAACGTTGAACCTAAAGAGGATGATAACTGTGTCATATGCTTGCAAGGGTTCTCTTCTGGTGATGCATTCACGTTACCTTGTTCCCATGTTTACCACTATGACTGTATTTTGGAATGGTTTGTGCAGAGTAGTACGTGCCCTTTGTGTCGCTTCTCATGCAGTCATACATTGTTACAATGA 663 0.4118 MSLEAQEPTHSNGGGDSCNDTHRVHIKMISVASSSWEQIKLCSLELQIGHDSFTDESFCKDLIKPCLVDLDIPQAYYNGHDCDMVVKLSRMFHDLMLQRHGCNHEDYICVFIIVYPTCCFYNLVNSSCYFHAEQIPSSELIQRMTCEGGETSLPAGASALLNVEPKEDDNCVICLQGFSSGDAFTLPCSHVYHYDCILEWFVQSSTCPLCRFSCSHTLLQ* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01231 220 ProSiteProfiles Zinc finger RING-type profile. 171 211 IPR001841 -
Rops8g01231 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 218 IPR013083 -
Rops8g01231 220 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 105 212 - -
Rops8g01231 220 SMART ringv_2 170 211 IPR011016 GO:0008270
Rops8g01231 220 Pfam Ring finger domain 169 211 IPR001841 -
Rops8g01231 220 SMART ring_2 171 210 IPR001841 -
Rops8g01231 220 SUPERFAMILY RING/U-box 163 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01231 Rops-Chr8 26706829 26707491 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01231 167 211 C3H Transcription Factor Family AT4G12190 46.939 3.79e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01231 - - aprc:113862471 169.474