Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01218 ATGCATTGCTCATTCTTCTTCATCACCATCATCGGAGAAGAAGCCCTCTTCATCAGATTCACTAGGAGAAGAAACGTGGTATGGAATCAGGGATCTTATTATGAAACGCGTTGTTTCCCTTCAGATCTTCATCGCCACCTCGCAATCGCCATAAGTGGCGGGATGAGCTATGGAGCGGAGGAGCTTGAACAACGATTAGGTTTTCTGAGGCACGAAATGGTGGACGGATTAGACGAAGCCTCAAAGAGGCGACCTTTCTTCAGTTCACCGGATGAACTGTTCGATGAGGAGTATTGCGAGGAGCAGTCGCCAGAGAAGAAGCGCCGCCTCACTTCCGAGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAGAACCGTAGGGCTCGATGGAAGACCAAGCAACCTGAAGGGGATTATGATGTTCTCAAGGCTTCTTATGATTCCCTACTTTCAACATATGATTCCATTGTGAAGGAGAATGAGAAACTCAAATCTGAGGTGGCATCCTTGAATGAGAAGCTTCAAGTTCAAGCTAAAGAGATGCCAGGAGAACCATTATCCGACAAGAAAGATGATCCACTTCCAGTAGATATAGCTCAAATTTTCAGCATGAAGGTGGAGGACCACATGAGTTCTGGGAGTGTTGGAAGTGCAGTGGTGGATGAAGTTGTTTCGAACAATGTTCAGGGCACTTCAGGGTGCAAATTTGAACTTTTGCTGCGGGATTTGATCCCTATGTTGCAGCCGTGCCTCAATATGTTGTTGGCTATGCTGGAAGGGCCAAATGGGGAAGATATGCGAGATCTTTTATTGGAGCTGTGCATGACCTTACCTGCTCGTTTGAGCTCTCTGTTACCATACCTTTCTCGTCTTATGAAGCCTTTGGTATTATGTCTTAAGGGAAGTGATGAACTAGTGAGTCTTGGTTTACGAACACTTGAGTTTTGGGTTGATAGTTTAAATCCTGACTTCCTCGAGCCTAGTATGGCCAATGTTAGGTCTGATGTGGACGAAATAGACGAAGCCTCAAAGAGGCGACCTTTCTTCAGTTCACCGGATGAACTGTTCGATGAGGAGTATTACGAGGAGCAGTCGCCAGAGAAGAAGCGCCGCCTCACTTCCGAGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAGAACCGTAGGGCTCGATGGAAGACCAAGCAACCTGAAGGGGATTATGATGTTCTCAAGGCTTCTTATGATTCCCTACTTTCAACATATGATTCCATTGTGAAGGAGAATGAGAAACTCAAATCTGAGGTGGCATCCTTGAATGAGAAGCTTCAAGTTCAAGCTAAAGAGATGCCAGGAGAACCATTATCCGACAAGAAAGATGATCCACTTCCAGTAGATATAGCTCAAATTTTCAGCATGAAGGTGGAGGACCACATGAGTTCTGGGAGTGTTGGAAGTGCAGTGGTGGATGAAGTGCTTGCACTATAG 1461 0.4641 MHCSFFFITIIGEEALFIRFTRRRNVVWNQGSYYETRCFPSDLHRHLAIAISGGMSYGAEELEQRLGFLRHEMVDGLDEASKRRPFFSSPDELFDEEYCEEQSPEKKRRLTSEQPRQVAVWFQNRRARWKTKQPEGDYDVLKASYDSLLSTYDSIVKENEKLKSEVASLNEKLQVQAKEMPGEPLSDKKDDPLPVDIAQIFSMKVEDHMSSGSVGSAVVDEVVSNNVQGTSGCKFELLLRDLIPMLQPCLNMLLAMLEGPNGEDMRDLLLELCMTLPARLSSLLPYLSRLMKPLVLCLKGSDELVSLGLRTLEFWVDSLNPDFLEPSMANVRSDVDEIDEASKRRPFFSSPDELFDEEYYEEQSPEKKRRLTSEQPRQVAVWFQNRRARWKTKQPEGDYDVLKASYDSLLSTYDSIVKENEKLKSEVASLNEKLQVQAKEMPGEPLSDKKDDPLPVDIAQIFSMKVEDHMSSGSVGSAVVDEVLAL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01218 486 SMART HOX_1 79 136 IPR001356 GO:0003677
Rops8g01218 486 SMART HOX_1 341 397 IPR001356 GO:0003677
Rops8g01218 486 Coils Coil 152 179 - -
Rops8g01218 486 SUPERFAMILY Homeodomain-like 94 142 IPR009057 -
Rops8g01218 486 Coils Coil 413 440 - -
Rops8g01218 486 ProSiteProfiles 'Homeobox' domain profile. 376 393 IPR001356 GO:0003677
Rops8g01218 486 Pfam Tra1 HEAT repeat central region 231 335 IPR046807 -
Rops8g01218 486 SUPERFAMILY Homeodomain-like 354 403 IPR009057 -
Rops8g01218 486 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 114 190 IPR045224 GO:0003700
Rops8g01218 486 CDD homeodomain 343 394 IPR001356 GO:0003677
Rops8g01218 486 CDD homeodomain 103 133 IPR001356 GO:0003677
Rops8g01218 486 Gene3D - 353 397 - -
Rops8g01218 486 Gene3D - 94 136 - -
Rops8g01218 486 ProSiteProfiles 'Homeobox' domain profile. 115 132 IPR001356 GO:0003677
Rops8g01218 486 Pfam Homeobox associated leucine zipper 132 174 IPR003106 GO:0006355|GO:0043565
Rops8g01218 486 Pfam Homeobox associated leucine zipper 393 435 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01218 Rops-Chr8 26428291 26459076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01218 314 482 Homeobox Transcription Factor Family AT3G01470 49.254 2.87e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops8g01218 HALZ 2.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01218 - - gmx:100813420 226.483