Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01213 ATGGTGGAAGGTGGTGGAGATGAGGTTGCAGTTGATGCACTTTCCACAGAAGAATGGTTGTTGCATGCTCAGGAACTTGTTCCTATTGCAGTTGATAAGGCAAGAGAGGTTAAGGGGTTTTCTGGTAGATGGAAGATGATCATTTCCAAATTAGAACTGATCCCGTCGCGTTTATCAGACTTATCAAGCCATCCATGCTTCTCAAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTCAAAGAAGCAATTGGATTGGCTGAATTGTGTGTGAAGGAGAAGTATGAGGGTAAGCTTCAGATGCAGAGTGATCTTGATGCATTAATTGGGAAACTGGATTTGAATTTAAGAGATTGTGGGCTTTTAATCAAGACTGGTGTACTTGGTGAGGCTACTTTGCCATTGACCGTGGCTGTGTCCGGTTCCGTGGCAGAATCAGATGTTGCAACACACAACAACATAAGGGAATTGCTAGCACGCCTTCAGATCGGGCACTTGGAAGCAAAGCACAAAGCTTTAGACAGTGTTGTTGAAGTTATGAAAGAAGATGAAAAGAATGTTTTAGCTGTTCTTGGTAGGAGCAACATTGCTGCTTTAGTTCAATTGCTTACAGCGACATCTCCCAGGATAAGAGAGAAAACAGTTACGGTGATTTGCTCACTTGCAGAATCAGGGAGCTTTGAGAATTGGCTAGTTTCTGAAGGAGTTCTACCACCTCTCATAAGGCTTGTTGAATCAGGAAGTACCATAGGTAAAGAGAAGGCTACAATATCCCTTCAGAGGTTGTCAATGTCAACCGAAACAGCACGTGAAATCGTTGGACATGGTGGTGTTCGTCCACTGGTTGAGCTTTGTCAAACTGGTGATTCTGTGTCACAAGCTGCTGCAGCTTGTACTTTGAAGAATATCTCAGCTGTTCCTGAAGTGAGACAAGCTTTGGCTGAAGAAGGGATTGTGAAGGTCATGATCAATCTACTTAACTGTGGAATGTTGTTAGGTTCCAAAGAGCATGCAGCTGAATGCTTGCAGAATCTCACTGCAAGCAATGAGAATCTAAGGAGGAGTGTGATATCAGAAGGTGGTGTTAGGAGTCTTTTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCTGCAGTTGGGGCATTGAGGAATTTGGTTGGATCAGTTCCTGTAGAAACTTTGGTTTCATTAGGATTCCTTCCCCGTTTGGTTCATGTTCTAAAGTCTGGATCTTTAGGTGCTCAGCAAGCAGCCACGTCAGCGATCTGCCGGGTTTGCAGCTCCACAGAGATGAAGAAAATGGTTGGTGAATCTGGATCCATACCTCTCCTTGTAAAGATGCTTGAGGCTAAATCAAACAGTGCTAGAGAGGTTGCTGCACAAGCAATGGCAAGCTTGATGATTCTGTCCCAGAATAGAAGAGAAGTTAAGAAGGATGATAAAAGTGTGCCAAATTTGGTTCAGTTGCTTGATCCAAGTCCACAGAACACAGCTAAAAAATATGCAGTTTCATGCCTTGGATCACTTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCATATGGAGCAATAGGGTATCTCAAGAAACTTACTGAGATGGACATTCCAGGTGCTAAAAAGTTACATGAGAGGTTGGAAAAAGGGAAATTTAGAAGTTTATTTAGTAAGAAATAG 1689 0.4269 MVEGGGDEVAVDALSTEEWLLHAQELVPIAVDKAREVKGFSGRWKMIISKLELIPSRLSDLSSHPCFSKNALCKEQLQAVSKTLKEAIGLAELCVKEKYEGKLQMQSDLDALIGKLDLNLRDCGLLIKTGVLGEATLPLTVAVSGSVAESDVATHNNIRELLARLQIGHLEAKHKALDSVVEVMKEDEKNVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLAESGSFENWLVSEGVLPPLIRLVESGSTIGKEKATISLQRLSMSTETAREIVGHGGVRPLVELCQTGDSVSQAAAACTLKNISAVPEVRQALAEEGIVKVMINLLNCGMLLGSKEHAAECLQNLTASNENLRRSVISEGGVRSLLAYLDGPLPQESAVGALRNLVGSVPVETLVSLGFLPRLVHVLKSGSLGAQQAATSAICRVCSSTEMKKMVGESGSIPLLVKMLEAKSNSAREVAAQAMASLMILSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSSSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLHERLEKGKFRSLFSKK* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01213 562 Gene3D - 148 336 IPR011989 -
Rops8g01213 562 SMART arm_5 392 431 IPR000225 GO:0005515
Rops8g01213 562 SMART arm_5 473 515 IPR000225 GO:0005515
Rops8g01213 562 SMART arm_5 432 472 IPR000225 GO:0005515
Rops8g01213 562 SMART arm_5 352 391 IPR000225 GO:0005515
Rops8g01213 562 SMART arm_5 310 351 IPR000225 GO:0005515
Rops8g01213 562 SMART arm_5 187 227 IPR000225 GO:0005515
Rops8g01213 562 SMART arm_5 269 309 IPR000225 GO:0005515
Rops8g01213 562 SUPERFAMILY ARM repeat 158 539 IPR016024 -
Rops8g01213 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 560 - -
Rops8g01213 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 443 479 IPR000225 GO:0005515
Rops8g01213 562 Pfam Armadillo/beta-catenin-like repeat 273 309 IPR000225 GO:0005515
Rops8g01213 562 Pfam Armadillo/beta-catenin-like repeat 392 430 IPR000225 GO:0005515
Rops8g01213 562 Gene3D - 337 545 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01213 Rops-Chr8 26369714 26373255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01213 402 545 U-box Gene Family AT3G54790 29.167 1.08e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01213 - - gmx:100781453 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01213 8 26369714 26373255 Rops8g01213 8 26369714 26373255 ECH