Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01212 ATGGCACAAGCTGAAGCTAAAAGAAATGCTTCTTCTGTTACCAAGAATGTGACTCAATCAAACAAACTCAGCACCATCAAAAGGTTCATTGGGGTGAGGCAAAGGCCCTCAGGAAGGTGGGTAGCAGAGATCAAAGACTCATCTCAACATGTAAGGTTATGGCTTGGAACCTATGACACACCAGAAGAAGCAGCTAGAGCTTATGATGAAGCAGCTAGAACTCTGCGTGGGGAAAATGCTCGAACCAACTTTGCATCAGTGAACCAGACCACAGAAAACTCTCCTCTTTCCAATGATGGAAAACATGGGTTAAGTCTTGCTTCATTGAAAGCCAAATTGAGCAAGAATCTTCAAAGCATCATGGGAAGGACCAATGATTGCAAGTCATCAAAGAATAAGGTGAGTGACCATTTCACCTTTGCTACAATATTCCACCGTAAGAGTAGTACTAATTACCAGCACCAAATCCCTCCAATGGATGTTAAGAACATTGAGAAAGTGGTGCAGCCTAGCATTGTTGTGCCCCCTTTGGAATCTGACCCTTTTTCTTGGGAAACATCTAGTGTTTCTGAGTGTAGTTCTGAATGGATCGGGTTCAGGCAACCCGTGTTGGATTCCGGGTCAAGTGGGTCAGATGTTGGGGAGTTTAGGGTTGGTGATGAAGGGTCTTTGGACCAATTGATGGGGTGGGTGGATAGTCCAGATATTTATGCTTGTGATGGAAGTGAGAGTTCAAGGAGCAAAAGGTTTAAGGTCTCTCCTTCTGTTCTTGTGCCACCAACTTTCACTTTGTCTCCATATGATTATGATTGTGGTTCTCCATATAGTGGTTGTGGATCTCCTTACATTGGTTATGGTTCTCAATATAATGGTGGAAAGTGA 882 0.4354 MAQAEAKRNASSVTKNVTQSNKLSTIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARTLRGENARTNFASVNQTTENSPLSNDGKHGLSLASLKAKLSKNLQSIMGRTNDCKSSKNKVSDHFTFATIFHRKSSTNYQHQIPPMDVKNIEKVVQPSIVVPPLESDPFSWETSSVSECSSEWIGFRQPVLDSGSSGSDVGEFRVGDEGSLDQLMGWVDSPDIYACDGSESSRSKRFKVSPSVLVPPTFTLSPYDYDCGSPYSGCGSPYIGYGSQYNGGK* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01212 293 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Rops8g01212 293 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Rops8g01212 293 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Rops8g01212 293 FunFam ethylene-responsive transcription factor RAP2-11 27 86 - -
Rops8g01212 293 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Rops8g01212 293 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Rops8g01212 293 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Rops8g01212 293 SUPERFAMILY DNA-binding domain 28 85 IPR016177 GO:0003677
Rops8g01212 293 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Rops8g01212 293 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01212 Rops-Chr8 26327279 26328160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01212 14 97 AP2-EREBP Transcription Factor Family AT5G19790 61.905 1.16e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops8g01212 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01212 K09286 - gmx:100799444 325.479