Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01211 ATGTTAGGTTCAGGTACTAATTTGGTGACCACGGTTATTGGGTTTGGCATGAGTGCTACTTTCATTGTGTTTGTCTGTACCAGAATAATTTGTGGAAGGCTAAGAGGGGGTGTTGAATCTCGGATGAGGTATGAGTTTGAATCAAGAATTGATCTAGAACAGCCAGAACATCTTGTTAATGACCATGAACCTGAGTCTGTTCTGCTTGATGCCATCCCCACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCTTTGAAGATACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGCATCATGCCCAAATGTGGTCACACTTTTCATCTTTGTTGCATTGATATATGGCTTAGAAAACAATCTACCTGTCCAGTATGCCGCTTGCCATTGAAAAACTCTTCTGAAACAAAACATGTGAGACCTGTGACCTTTACCATGAGCCAATCTCTTGATGAGTCTCATTCATCAGAAAGGAATGAAGATATTATTGAGAGGCATGTTGAACCTACTTCTAATAACTCATTACAACCAAGTTCTGGAGAACCAGAAGCAAGGCAATAA 576 0.3993 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMRYEFESRIDLEQPEHLVNDHEPESVLLDAIPTLKFNQEAFSSFEDTQCVICLADYKEREVLRIMPKCGHTFHLCCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSLDESHSSERNEDIIERHVEPTSNNSLQPSSGEPEARQ* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01211 191 MobiDBLite consensus disorder prediction 158 172 - -
Rops8g01211 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 142 IPR013083 -
Rops8g01211 191 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Rops8g01211 191 MobiDBLite consensus disorder prediction 151 191 - -
Rops8g01211 191 SUPERFAMILY RING/U-box 80 139 - -
Rops8g01211 191 MobiDBLite consensus disorder prediction 173 191 - -
Rops8g01211 191 Pfam Ring finger domain 89 132 IPR001841 -
Rops8g01211 191 CDD RING-H2_EL5-like 89 132 - -
Rops8g01211 191 SMART ring_2 90 131 IPR001841 -
Rops8g01211 191 PANTHER OS11G0150450 PROTEIN 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01211 Rops-Chr8 26300932 26302880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01211 79 135 C3H Transcription Factor Family AT4G10160 56.140 2.05e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01211 - - gmx:100780922 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01211 8 26300932 26302880 Rops8g01211 8 26300932 26302880 ECH