LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g01208	ATGGGGGTAGGTGGTAATTTCTGGGACCTGTTGAAGCCCTATGCACGAAACGAAGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCTGTGGACCTTTCTTTCTGGATTGTTCAGCACAGGAATGTCATCAAGACTCATGTTAAGAAACCCCACCTCAGGCTCACTTTCTTTCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCGGTATTCGTTGTTGATGGGACCCCATCACCGTTGAAATCACAGGCGAGGATTGCGAGATTTTTCCGGTCTTCCGGCATCGAATTGACTAGCTTGCCGGTACCTGAGGAAGGTGCTTCAGCTGAGAGGAACAGTTTGTTCTCAAGTTGTGTTCAAGAATGTGTGGAACTTGTTGACCTGCTTGGAATGCCTGTATTGAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTATGGGGCCAAATGCATTATAAAATGTTTCTGTCCCAATTCCAAAGAACCATTTGAATGCTACAATATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGGAAACACTTAATAGCAATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGAATTGGGCTCGATACTGCTCTTCATTTTGTTCAAGCATTTAGTGAAGATGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTACAAGTTCCCATCAGCATTAAATCTGAGGCCAGTTCGGATATAGATAAGAACTCCCCAAATACCAAACAATCTCACTGCTCATTCTGTGGGCATCCAGGCAGCAAAAGAGATCATATGAAGTTTTCCTGCGAATATTGTGTCACAGATGACAATGAAGGTTGCCGGAGAAAACCAGAGGGTTTTAAATGTGATTGCTTCTCTTGTGGTATGAATAAGAAACATAAGGAGCAGCAAAGGCTGGAAAATTGGCACACCAAAATTTGTCACAAGATTGCAGAGGAGCCAAATTTCCCAAAGGATGAAATCATTGGTATGTATTTATGCAATGACAATGGTTACTTTAATGAAAATGATGGCCCTGGAATCTTATGGGGAAGACCCAATATTGAGATGCTGATTGACTTTTTAAATTTCCATCAGCACTGGGATCCATCCTACATTCGACGGCTGATGTTTCCTATGATGTCCACCATCTTTTTGAGGGATATGGCTACAACTACAGAAGAAAGTTTGTTATTTGGGCAATTTGAGTTTGATTCTATAGAACGTGTGAAGATGAGATATGGATATCAGTTATATGTGGTCAAGTGGAAACGAGCTGTGGGCAACATTGCCGTTAAAATTCCATCAAAGGAATCTGGCACACAACAAGTTGTTAGAGAGGTTGATGAAAGTGAAACAGTGGATCTACTGGATGACTGTGATGTTCCTGCAATTCATGAAGATGATGGATGTAGTTTTCTGTTGACAGATGAAAATATGGACCTTGTAGAGGCTGCTTTTCCAGCAGAAGTTAAAAGGTTTTGGCAGGATCAGGAGCTGAAGGGTGTGAAGGGAAGAAAGAATTTAACCTCAAGATCTCAAGAAAATGAAAAACCAGCATCACCAAACTCAAAAAGCATCCAGCTAAATATTACAGAGTTCTACCCTACAACCAAAATTAAACATCAATCAAAACAAGGAGAAGGGTCATCCAAGAATATTGATGGCCAAGGCAGTGGAGGCTCTAAAATAAGAAGGAAAAGTTCAAGTCCTAATCTTTCAAAATCTGTGAGGCGTCGCCTTTTATTTGATTAA	1833	0.4103	MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHRNVIKTHVKKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIELTSLPVPEEGASAERNSLFSSCVQECVELVDLLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLYGAKCIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDTALHFVQAFSEDDILNRLHEIGKGNALQVPISIKSEASSDIDKNSPNTKQSHCSFCGHPGSKRDHMKFSCEYCVTDDNEGCRRKPEGFKCDCFSCGMNKKHKEQQRLENWHTKICHKIAEEPNFPKDEIIGMYLCNDNGYFNENDGPGILWGRPNIEMLIDFLNFHQHWDPSYIRRLMFPMMSTIFLRDMATTTEESLLFGQFEFDSIERVKMRYGYQLYVVKWKRAVGNIAVKIPSKESGTQQVVREVDESETVDLLDDCDVPAIHEDDGCSFLLTDENMDLVEAAFPAEVKRFWQDQELKGVKGRKNLTSRSQENEKPASPNSKSIQLNITEFYPTTKIKHQSKQGEGSSKNIDGQGSGGSKIRRKSSSPNLSKSVRRRLLFD*	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g01208	610	FunFam	Flap endonuclease GEN-like 1	198	256	-	-
	Rops8g01208	610	Gene3D	-	3	197	-	-
	Rops8g01208	610	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	203	218	IPR006084	-
	Rops8g01208	610	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	70	89	IPR006084	-
	Rops8g01208	610	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	25	39	IPR006084	-
	Rops8g01208	610	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	127	144	IPR006084	-
	Rops8g01208	610	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	148	168	IPR006084	-
	Rops8g01208	610	SMART	xpgn3	1	96	IPR006085	GO:0004518
	Rops8g01208	610	CDD	PIN_GEN1	2	202	-	-
	Rops8g01208	610	Pfam	XPG I-region	131	213	IPR006086	GO:0004518
	Rops8g01208	610	Pfam	XPG N-terminal domain	1	89	IPR006085	GO:0004518
	Rops8g01208	610	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	198	414	IPR036279	-
	Rops8g01208	610	SMART	xpgineu	128	198	IPR006086	GO:0004518
	Rops8g01208	610	MobiDBLite	consensus disorder prediction	540	602	-	-
	Rops8g01208	610	FunFam	Flap endonuclease GEN-like 1	2	197	-	-
	Rops8g01208	610	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	551	IPR006084	-
	Rops8g01208	610	SUPERFAMILY	PIN domain-like	6	213	IPR029060	-
	Rops8g01208	610	MobiDBLite	consensus disorder prediction	531	610	-	-
	Rops8g01208	610	Gene3D	-	198	261	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g01208	Rops-Chr8	26286989	26287255	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g01208	16	245	Core DNA Replication Machinery Family	AT5G26680	28.800	1.52e-16	80.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g01208	K15338		-	gmx:100791251	999.579