Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g01208 | ATGGGGGTAGGTGGTAATTTCTGGGACCTGTTGAAGCCCTATGCACGAAACGAAGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCTGTGGACCTTTCTTTCTGGATTGTTCAGCACAGGAATGTCATCAAGACTCATGTTAAGAAACCCCACCTCAGGCTCACTTTCTTTCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCGGTATTCGTTGTTGATGGGACCCCATCACCGTTGAAATCACAGGCGAGGATTGCGAGATTTTTCCGGTCTTCCGGCATCGAATTGACTAGCTTGCCGGTACCTGAGGAAGGTGCTTCAGCTGAGAGGAACAGTTTGTTCTCAAGTTGTGTTCAAGAATGTGTGGAACTTGTTGACCTGCTTGGAATGCCTGTATTGAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTATGGGGCCAAATGCATTATAAAATGTTTCTGTCCCAATTCCAAAGAACCATTTGAATGCTACAATATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGGAAACACTTAATAGCAATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGAATTGGGCTCGATACTGCTCTTCATTTTGTTCAAGCATTTAGTGAAGATGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTACAAGTTCCCATCAGCATTAAATCTGAGGCCAGTTCGGATATAGATAAGAACTCCCCAAATACCAAACAATCTCACTGCTCATTCTGTGGGCATCCAGGCAGCAAAAGAGATCATATGAAGTTTTCCTGCGAATATTGTGTCACAGATGACAATGAAGGTTGCCGGAGAAAACCAGAGGGTTTTAAATGTGATTGCTTCTCTTGTGGTATGAATAAGAAACATAAGGAGCAGCAAAGGCTGGAAAATTGGCACACCAAAATTTGTCACAAGATTGCAGAGGAGCCAAATTTCCCAAAGGATGAAATCATTGGTATGTATTTATGCAATGACAATGGTTACTTTAATGAAAATGATGGCCCTGGAATCTTATGGGGAAGACCCAATATTGAGATGCTGATTGACTTTTTAAATTTCCATCAGCACTGGGATCCATCCTACATTCGACGGCTGATGTTTCCTATGATGTCCACCATCTTTTTGAGGGATATGGCTACAACTACAGAAGAAAGTTTGTTATTTGGGCAATTTGAGTTTGATTCTATAGAACGTGTGAAGATGAGATATGGATATCAGTTATATGTGGTCAAGTGGAAACGAGCTGTGGGCAACATTGCCGTTAAAATTCCATCAAAGGAATCTGGCACACAACAAGTTGTTAGAGAGGTTGATGAAAGTGAAACAGTGGATCTACTGGATGACTGTGATGTTCCTGCAATTCATGAAGATGATGGATGTAGTTTTCTGTTGACAGATGAAAATATGGACCTTGTAGAGGCTGCTTTTCCAGCAGAAGTTAAAAGGTTTTGGCAGGATCAGGAGCTGAAGGGTGTGAAGGGAAGAAAGAATTTAACCTCAAGATCTCAAGAAAATGAAAAACCAGCATCACCAAACTCAAAAAGCATCCAGCTAAATATTACAGAGTTCTACCCTACAACCAAAATTAAACATCAATCAAAACAAGGAGAAGGGTCATCCAAGAATATTGATGGCCAAGGCAGTGGAGGCTCTAAAATAAGAAGGAAAAGTTCAAGTCCTAATCTTTCAAAATCTGTGAGGCGTCGCCTTTTATTTGATTAA | 1833 | 0.4103 | MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHRNVIKTHVKKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIELTSLPVPEEGASAERNSLFSSCVQECVELVDLLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLYGAKCIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDTALHFVQAFSEDDILNRLHEIGKGNALQVPISIKSEASSDIDKNSPNTKQSHCSFCGHPGSKRDHMKFSCEYCVTDDNEGCRRKPEGFKCDCFSCGMNKKHKEQQRLENWHTKICHKIAEEPNFPKDEIIGMYLCNDNGYFNENDGPGILWGRPNIEMLIDFLNFHQHWDPSYIRRLMFPMMSTIFLRDMATTTEESLLFGQFEFDSIERVKMRYGYQLYVVKWKRAVGNIAVKIPSKESGTQQVVREVDESETVDLLDDCDVPAIHEDDGCSFLLTDENMDLVEAAFPAEVKRFWQDQELKGVKGRKNLTSRSQENEKPASPNSKSIQLNITEFYPTTKIKHQSKQGEGSSKNIDGQGSGGSKIRRKSSSPNLSKSVRRRLLFD* | 611 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g01208 | 610 | FunFam | Flap endonuclease GEN-like 1 | 198 | 256 | - | - | |
Rops8g01208 | 610 | Gene3D | - | 3 | 197 | - | - | |
Rops8g01208 | 610 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 203 | 218 | IPR006084 | - | |
Rops8g01208 | 610 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 70 | 89 | IPR006084 | - | |
Rops8g01208 | 610 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 25 | 39 | IPR006084 | - | |
Rops8g01208 | 610 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 127 | 144 | IPR006084 | - | |
Rops8g01208 | 610 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 148 | 168 | IPR006084 | - | |
Rops8g01208 | 610 | SMART | xpgn3 | 1 | 96 | IPR006085 | GO:0004518 | |
Rops8g01208 | 610 | CDD | PIN_GEN1 | 2 | 202 | - | - | |
Rops8g01208 | 610 | Pfam | XPG I-region | 131 | 213 | IPR006086 | GO:0004518 | |
Rops8g01208 | 610 | Pfam | XPG N-terminal domain | 1 | 89 | IPR006085 | GO:0004518 | |
Rops8g01208 | 610 | SUPERFAMILY | 5' to 3' exonuclease, C-terminal subdomain | 198 | 414 | IPR036279 | - | |
Rops8g01208 | 610 | SMART | xpgineu | 128 | 198 | IPR006086 | GO:0004518 | |
Rops8g01208 | 610 | MobiDBLite | consensus disorder prediction | 540 | 602 | - | - | |
Rops8g01208 | 610 | FunFam | Flap endonuclease GEN-like 1 | 2 | 197 | - | - | |
Rops8g01208 | 610 | PANTHER | FLAP ENDONUCLEASE FAMILY MEMBER | 1 | 551 | IPR006084 | - | |
Rops8g01208 | 610 | SUPERFAMILY | PIN domain-like | 6 | 213 | IPR029060 | - | |
Rops8g01208 | 610 | MobiDBLite | consensus disorder prediction | 531 | 610 | - | - | |
Rops8g01208 | 610 | Gene3D | - | 198 | 261 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g01208 | Rops-Chr8 | 26286989 | 26287255 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g01208 | 16 | 245 | Core DNA Replication Machinery Family | AT5G26680 | 28.800 | 1.52e-16 | 80.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g01208 | K15338 | - | gmx:100791251 | 999.579 |