Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01208 ATGGGGGTAGGTGGTAATTTCTGGGACCTGTTGAAGCCCTATGCACGAAACGAAGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCTGTGGACCTTTCTTTCTGGATTGTTCAGCACAGGAATGTCATCAAGACTCATGTTAAGAAACCCCACCTCAGGCTCACTTTCTTTCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCGGTATTCGTTGTTGATGGGACCCCATCACCGTTGAAATCACAGGCGAGGATTGCGAGATTTTTCCGGTCTTCCGGCATCGAATTGACTAGCTTGCCGGTACCTGAGGAAGGTGCTTCAGCTGAGAGGAACAGTTTGTTCTCAAGTTGTGTTCAAGAATGTGTGGAACTTGTTGACCTGCTTGGAATGCCTGTATTGAAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTATGGGGCCAAATGCATTATAAAATGTTTCTGTCCCAATTCCAAAGAACCATTTGAATGCTACAATATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGGAAACACTTAATAGCAATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGAATTGGGCTCGATACTGCTCTTCATTTTGTTCAAGCATTTAGTGAAGATGATATATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTACAAGTTCCCATCAGCATTAAATCTGAGGCCAGTTCGGATATAGATAAGAACTCCCCAAATACCAAACAATCTCACTGCTCATTCTGTGGGCATCCAGGCAGCAAAAGAGATCATATGAAGTTTTCCTGCGAATATTGTGTCACAGATGACAATGAAGGTTGCCGGAGAAAACCAGAGGGTTTTAAATGTGATTGCTTCTCTTGTGGTATGAATAAGAAACATAAGGAGCAGCAAAGGCTGGAAAATTGGCACACCAAAATTTGTCACAAGATTGCAGAGGAGCCAAATTTCCCAAAGGATGAAATCATTGGTATGTATTTATGCAATGACAATGGTTACTTTAATGAAAATGATGGCCCTGGAATCTTATGGGGAAGACCCAATATTGAGATGCTGATTGACTTTTTAAATTTCCATCAGCACTGGGATCCATCCTACATTCGACGGCTGATGTTTCCTATGATGTCCACCATCTTTTTGAGGGATATGGCTACAACTACAGAAGAAAGTTTGTTATTTGGGCAATTTGAGTTTGATTCTATAGAACGTGTGAAGATGAGATATGGATATCAGTTATATGTGGTCAAGTGGAAACGAGCTGTGGGCAACATTGCCGTTAAAATTCCATCAAAGGAATCTGGCACACAACAAGTTGTTAGAGAGGTTGATGAAAGTGAAACAGTGGATCTACTGGATGACTGTGATGTTCCTGCAATTCATGAAGATGATGGATGTAGTTTTCTGTTGACAGATGAAAATATGGACCTTGTAGAGGCTGCTTTTCCAGCAGAAGTTAAAAGGTTTTGGCAGGATCAGGAGCTGAAGGGTGTGAAGGGAAGAAAGAATTTAACCTCAAGATCTCAAGAAAATGAAAAACCAGCATCACCAAACTCAAAAAGCATCCAGCTAAATATTACAGAGTTCTACCCTACAACCAAAATTAAACATCAATCAAAACAAGGAGAAGGGTCATCCAAGAATATTGATGGCCAAGGCAGTGGAGGCTCTAAAATAAGAAGGAAAAGTTCAAGTCCTAATCTTTCAAAATCTGTGAGGCGTCGCCTTTTATTTGATTAA 1833 0.4103 MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHRNVIKTHVKKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSQARIARFFRSSGIELTSLPVPEEGASAERNSLFSSCVQECVELVDLLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLYGAKCIIKCFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDTALHFVQAFSEDDILNRLHEIGKGNALQVPISIKSEASSDIDKNSPNTKQSHCSFCGHPGSKRDHMKFSCEYCVTDDNEGCRRKPEGFKCDCFSCGMNKKHKEQQRLENWHTKICHKIAEEPNFPKDEIIGMYLCNDNGYFNENDGPGILWGRPNIEMLIDFLNFHQHWDPSYIRRLMFPMMSTIFLRDMATTTEESLLFGQFEFDSIERVKMRYGYQLYVVKWKRAVGNIAVKIPSKESGTQQVVREVDESETVDLLDDCDVPAIHEDDGCSFLLTDENMDLVEAAFPAEVKRFWQDQELKGVKGRKNLTSRSQENEKPASPNSKSIQLNITEFYPTTKIKHQSKQGEGSSKNIDGQGSGGSKIRRKSSSPNLSKSVRRRLLFD* 611
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01208 610 FunFam Flap endonuclease GEN-like 1 198 256 - -
Rops8g01208 610 Gene3D - 3 197 - -
Rops8g01208 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Rops8g01208 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Rops8g01208 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Rops8g01208 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Rops8g01208 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Rops8g01208 610 SMART xpgn3 1 96 IPR006085 GO:0004518
Rops8g01208 610 CDD PIN_GEN1 2 202 - -
Rops8g01208 610 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Rops8g01208 610 Pfam XPG N-terminal domain 1 89 IPR006085 GO:0004518
Rops8g01208 610 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 414 IPR036279 -
Rops8g01208 610 SMART xpgineu 128 198 IPR006086 GO:0004518
Rops8g01208 610 MobiDBLite consensus disorder prediction 540 602 - -
Rops8g01208 610 FunFam Flap endonuclease GEN-like 1 2 197 - -
Rops8g01208 610 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 551 IPR006084 -
Rops8g01208 610 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Rops8g01208 610 MobiDBLite consensus disorder prediction 531 610 - -
Rops8g01208 610 Gene3D - 198 261 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops8g01208 Rops-Chr8 26286989 26287255 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01208 16 245 Core DNA Replication Machinery Family AT5G26680 28.800 1.52e-16 80.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01208 K15338 - gmx:100791251 999.579