Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01184 ATGGGAAGGACACCATGTTGTGACAAGAAAGGTTTGAAGAAAGGACCATGGACAGCTGAAGAAGATGAAATTCTTGCTAATTATATCATGAAGAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCCAAGATGACAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGGTGGACGAACTATCTCAGACCTGACATTAAACGTGGTCCCTTTACTCCTGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATTGCCTCTCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTTTGGAATACCCACTTGAAGAAGCGTCTCGAAAGCATGGGACTTGACCCCAAAACCCACCAGCCAGTAGCCTCATCTCGTGATCCCACTCACAAGTCACATACATCTGTTTCAACACGTCACATGGCTCAATGGGAAAATGCAAGGCTTGAAGCAGAAGCAAGGCTCTCAAGTGAATCATCACACTTCAACAATACCAACCCTTCCTCTGACTACTTCCTCCGCATATGGAACTCTGAAGTTGGAGAAGCATTTCGTAATGTTCACAAACCAGATAATAACAAAACAAGTTGTTGCCAAAGTCCTATTTCTGTTGGATCATCTTCTAACAAATGTGAATCAGTTTCTGCTGTTACTGCAGAATTGGCCTCCAACCCATTAGGATCCTCAAACACAACAAGCAATGATAATGTGAAAGAAGAGTTGGATGTGATTCATGGGGCTGATTCATCAAGCTCTAATGACTTGGAAGATTCATCAGACACTGCTTTGCAGCTCTTATTAGATTTTCCTATAAACAATGATATGAGCTTCTTAGAGGGTAACTCTTTTATTTGTAACCTTTAG 888 0.4234 MGRTPCCDKKGLKKGPWTAEEDEILANYIMKNGGHGSWRSLPKMTGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLESMGLDPKTHQPVASSRDPTHKSHTSVSTRHMAQWENARLEAEARLSSESSHFNNTNPSSDYFLRIWNSEVGEAFRNVHKPDNNKTSCCQSPISVGSSSNKCESVSAVTAELASNPLGSSNTTSNDNVKEELDVIHGADSSSSNDLEDSSDTALQLLLDFPINNDMSFLEGNSFICNL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01184 295 Gene3D - 70 145 - -
Rops8g01184 295 FunFam MYB transcription factor 70 117 - -
Rops8g01184 295 MobiDBLite consensus disorder prediction 122 148 - -
Rops8g01184 295 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Rops8g01184 295 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops8g01184 295 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops8g01184 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Rops8g01184 295 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops8g01184 295 CDD SANT 16 62 IPR001005 -
Rops8g01184 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 247 - -
Rops8g01184 295 Gene3D - 11 68 - -
Rops8g01184 295 FunFam Myb transcription factor 11 68 - -
Rops8g01184 295 SMART sant 67 115 IPR001005 -
Rops8g01184 295 SMART sant 13 64 IPR001005 -
Rops8g01184 295 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Rops8g01184 295 CDD SANT 70 113 IPR001005 -
Rops8g01184 295 MobiDBLite consensus disorder prediction 130 148 - -
Rops8g01184 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01184 Rops-Chr8 25874548 25876946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01184 1 289 MYB Transcription Factor Family AT3G61250 63.758 2.13e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g01184 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01184 K09422 - gmx:100816569 454.907