Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01183 ATGATGAACAACAACAATAGAAGGAGATATCCACCTGGGATAGGGTTAGGGCATAGTGGTAATGGTGGTGGTTTGAACTCACACCCTGGGTTACAAAGGCCATATCAACAACAGTATGTGCAGAGGCAGCATCAGCACCCTCAGCAGTATCAACAGAATCAACATCAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGTGGTTGAAAAGGAACCAGTTGGGTGGTCCTGACAACAACGAGGAGGTTGAGAAGACTATACAGTCTGAAGCCGTTGACCCTAGTTCACAAGATTGGAAGGCAACGCTAAGGATTCCACCACCTGACACACGCTATAGGACAGAGGATGTGACAGCAACCAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCATCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACGGGGAAAACGGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAGGATTATAATGCTATTCAAGTTGTTATACTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCAGTTCATTTGCTAGTTGGAACACCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTCTGCATTCTGAAAGATTGTTGTATGCTTGTTATGGACGAGGCTGATAAGCTTCTCTCCCCAGAGTTTCAACCTTCAATAGAGCAGCTGATACAATTTCTACCTCGAAACCGTCAAATCCTGATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGTAAGTCGTATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATATTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTTTTTCATGACTTCCGCAATGGTGCCTGCAGGAATCTCGTTTGTACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCATCTTGGTTTGGCAGTGAACTTGATCACTTATGAGGATCGCTTCAATTTATATAGGATTGAGCAAGAACTTGGCACCGAAATAAAACAAATCCCGCCGTTCATTGATCAGGCAATATATTGTAGGTGA 1518 0.4097 MMNNNNRRRYPPGIGLGHSGNGGGLNSHPGLQRPYQQQYVQRQHQHPQQYQQNQHQQQQQQQQQQQQQQQQQQQQWLKRNQLGGPDNNEEVEKTIQSEAVDPSSQDWKATLRIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDYNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCCMLVMDEADKLLSPEFQPSIEQLIQFLPRNRQILMFSATFPVTVKDFKDRYLRKSYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01183 505 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 502 IPR001650 -
Rops8g01183 505 FunFam ATP-dependent RNA helicase DDX6 336 505 - -
Rops8g01183 505 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Rops8g01183 505 Pfam Helicase conserved C-terminal domain 357 463 IPR001650 -
Rops8g01183 505 CDD SF2_C_DEAD 343 472 - -
Rops8g01183 505 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 332 IPR014001 -
Rops8g01183 505 Gene3D - 336 504 IPR027417 -
Rops8g01183 505 SMART ultradead3 150 346 IPR014001 -
Rops8g01183 505 SMART helicmild6 382 463 IPR001650 -
Rops8g01183 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 485 IPR027417 -
Rops8g01183 505 CDD DEADc_DDX6 133 333 - -
Rops8g01183 505 MobiDBLite consensus disorder prediction 1 122 - -
Rops8g01183 505 FunFam ATP-dependent RNA helicase DDX6 112 335 - -
Rops8g01183 505 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 54 504 - -
Rops8g01183 505 Coils Coil 52 75 - -
Rops8g01183 505 Gene3D - 88 335 IPR027417 -
Rops8g01183 505 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 131 159 IPR014014 GO:0003724
Rops8g01183 505 Pfam DEAD/DEAH box helicase 156 320 IPR011545 GO:0003676|GO:0005524
Rops8g01183 505 MobiDBLite consensus disorder prediction 30 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01183 Rops-Chr8 25835651 25842955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01183 131 495 Eukaryotic Initiation Factors Gene Family AT3G19760 38.147 2.29e-91 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01183 K12614 - jre:109009389 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01183 8 25835651 25842955 Rops8g01183 8 25835651 25842955 ECH