Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01176 ATGGATCGCGGGGACCAAATGGCGTTATCTGGCTCTGCTTCATACTTTATGCAGCAGAGAGGAATAGCTGGTTCTGGAGCACAACATGAGTTACATGTTTCACCTAGTATTCGTCCACTGTCTAATCCCAATCTACCATTTCAATCCAGCATTGGTGGTGGTACTATTGGATCCACATTACCATTGGAATCTTCAGCTATATCATCTCATGGTGTCAATGTAGGTGCTCCTACTGGCGCACCACCTGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGTTCTGATGGAACTGTATCATTGGCATTGACTCCAACATCATCTAGTCATCCTGGGGCCATGACACAAGGCCAGAAACGGGGTAGAGGGCGCCCACCTGGGACTGGGAAGAAACAGCAATTGGCTTCTCTTGGTTTATCATTGTTGGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATTATGGCATTTTCTCAGCAGGGGCCTAGAGCTATATGCATTTTGTCAGCCAATGGTTCTGTCTCAACTGTCACACTTCGTCAGGCTTCAACTTCAGGTGGCACCGTCACATACGAGGGGCGTTTTGAGATATTGTGCCTTTCAGGCTCTTACTTGCTTACTGATGATGGCGGCTCGCGCAATCGAACTGGTGGACTAAGTGTTTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGAGGAGTTGGTGGAGTGCTTATTGCATCAAGTGCTGTTCAGGTGATAGTTGGGAGCTTTATATGGAGTGGATCAAAGACAAAGAACAAGAAAAAGGAAGGCTCAGAAGTTGCTGTGGAGTCAGATCATCAAGGAGTTCAGAATCCAGTTGCACTGAATAGCATTTCACCAAATCAAAATCTTACTCCAACCTCATCTTTAAGTCCTTGGCCAGCATCACGGTCGTTGGATATGCGTAATTCCCATGTTGACATTGATTTAATGCGTGGGTGA 1014 0.4645 MDRGDQMALSGSASYFMQQRGIAGSGAQHELHVSPSIRPLSNPNLPFQSSIGGGTIGSTLPLESSAISSHGVNVGAPTGAPPGEPVKRKRGRPRKYGSDGTVSLALTPTSSSHPGAMTQGQKRGRGRPPGTGKKQQLASLGLSLLGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAICILSANGSVSTVTLRQASTSGGTVTYEGRFEILCLSGSYLLTDDGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSAVQVIVGSFIWSGSKTKNKKKEGSEVAVESDHQGVQNPVALNSISPNQNLTPTSSLSPWPASRSLDMRNSHVDIDLMRG* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01176 337 MobiDBLite consensus disorder prediction 296 322 - -
Rops8g01176 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Rops8g01176 337 CDD DUF296 153 267 IPR005175 -
Rops8g01176 337 MobiDBLite consensus disorder prediction 69 136 - -
Rops8g01176 337 FunFam AT-hook motif nuclear-localized protein 1-like 154 285 - -
Rops8g01176 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 68 312 IPR039605 GO:0003680
Rops8g01176 337 ProSiteProfiles PPC domain profile profile. 148 288 IPR005175 -
Rops8g01176 337 MobiDBLite consensus disorder prediction 102 118 - -
Rops8g01176 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 273 - -
Rops8g01176 337 Gene3D - 154 291 - -
Rops8g01176 337 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Rops8g01176 337 SMART AT_hook_2 87 99 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01176 Rops-Chr8 25705196 25711798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01176 1 337 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.883 1.01e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01176 - - gmx:100814615 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01176 8 25705196 25711798 Rops8g01176 8 25705196 25711798 ECH
Rops8g01176 8 25705196 25711798 Rops4g01472 4 37376077 37381912 PCT