Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01174 ATGCCATGTTGCATGGATTCACAAGTTGATGCATCTGTTGTTGAAGTTCCAGATGCCGAAAATGAGGATAGAATTGAGGCAAATAATGGGCCTGTATTTCATGAATTTACGTTCGAGCAACTTAATAATGCAACATCTGGTTTTGCTGTTGAGAATATAGTATCTGAACATGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGGAAGATGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGAAATGCTTGGCCTGATGCAAGGCAATTTTTGGAGGAAGCTAGATCCGTTGGTCAGCTTCGTAACCAAAGATTGGCAAATTTGCTTGGTTGTTGTTGTGAAGGTGATGAGAGGTTGCTTGTGGCTGAATATATGCCCAATGAAACACTTGCAAAACACCTTTTCCATTGTAATGGCTCCTTTCATGCATATGTCATACTTTTTAATTTTGGACATCTGATCAGGGACACACAACCGATGAAATGGGCAATGCGACTCAGAGTTGTTCTACATCTTGCAGAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCCCTCTATCATGACCTTAATGCATATAGAGTTCTATTTGATGAGGATGGTAATCCTAGGCTTTCAAGTTTTGGCCTTATGAAGAACAGTCGGGATGGGAAAAGTTATAGCACAAATTTGGCGTTTACCCCTCCAGAGTATCTCAGAACTGGGAGAGTAACGCCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTGCTTGACCTTCTAAGTGGGAAGCATATCCCCCCCAGTCATGCCCTTGATTTGATTCGAGACAGAAATCTTCAGATGCTAACAGATTCTTGTTTGGAAGGACAATTTTCTGATAATGATGGAACTGAGTTGGTGCGCTTGGCATCTCGATGTTTACAGTATGAACCTAGAGAACGGCCTAATCCAAAATCATTAGTGGCTGCTTTGGCTCTTCTTCAGAAAGAAACAGAGGTTCCTTCACACTTGTTGATGGGTATCATCACACATAGTGCTACTTTTGCTTCATTGACCCCACTTGGTGAAGCATGTTCAAGAAAGGACTTGACCGCCATACATGAAGTTCTTGAAAATATTGGCTATAAAGATGATGAAGGAGTTGCAAATGAGTTATCCTTCCAGATGTGGACTGATCAAATGCAGGACACACTAAATTGTAAGAAAAAAGGGGATGCTGCTTTCCGGCAGAAAGATTTCAGACTAGCAATTGAGTGCTACACTCAGTTCATTGATGTGGGAACGATGGTTTCTCCAACTGTCCATGCGCGGCGCAGTTTGTGTTATCTGATGAGTGACATGCCTCAGGAAGCTCTGAATGATGCAATGCAAGCACAAGTAATTTCCCCTGTATGGCACATTGCATCTTATCTTCAATCTGTTTCCCTGGCTGCACTGGGGATGGAGAATGAAGCACGAGTTGCACTTATAGAGGGAACAACATTGGAAGCCAAGCAAAATGGTGGAAGAAAGTAA 1503 0.4198 MPCCMDSQVDASVVEVPDAENEDRIEANNGPVFHEFTFEQLNNATSGFAVENIVSEHGEKAPNVVYKGKMENQMRIAVKRFNRNAWPDARQFLEEARSVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHCNGSFHAYVILFNFGHLIRDTQPMKWAMRLRVVLHLAEALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDNDGTELVRLASRCLQYEPRERPNPKSLVAALALLQKETEVPSHLLMGIITHSATFASLTPLGEACSRKDLTAIHEVLENIGYKDDEGVANELSFQMWTDQMQDTLNCKKKGDAAFRQKDFRLAIECYTQFIDVGTMVSPTVHARRSLCYLMSDMPQEALNDAMQAQVISPVWHIASYLQSVSLAALGMENEARVALIEGTTLEAKQNGGRK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01174 500 FunFam probable serine/threonine-protein kinase At4g35230 23 126 - -
Rops8g01174 500 ProSiteProfiles Protein kinase domain profile. 51 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01174 500 Gene3D Phosphorylase Kinase; domain 1 22 126 - -
Rops8g01174 500 SUPERFAMILY TPR-like 392 487 IPR011990 GO:0005515
Rops8g01174 500 Gene3D Tetratricopeptide repeat domain 391 500 IPR011990 GO:0005515
Rops8g01174 500 SUPERFAMILY Protein kinase-like (PK-like) 30 331 IPR011009 -
Rops8g01174 500 Gene3D Transferase(Phosphotransferase) domain 1 128 338 - -
Rops8g01174 500 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 13 496 IPR045845 GO:0004672|GO:0009742
Rops8g01174 500 FunFam probable serine/threonine-protein kinase At4g35230 391 500 - -
Rops8g01174 500 FunFam probable serine/threonine-protein kinase At5g41260 150 337 - -
Rops8g01174 500 Pfam Protein tyrosine and serine/threonine kinase 64 319 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01174 Rops-Chr8 25566458 25573611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01174 21 323 Glycoside Hydrolase AT3G07070 32.523 5.16e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Rops8g01174 PK_Tyr_Ser-Thr 6.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01174 K14500 - gmx:100781311 864.374