Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01172 ATGGGTTCCTTTGTCTGGACTGTTGATAGGTTCATTTGGTACTTATTCTTCATGTATTTTACTATGTTATATTTTACCTTCTATGGGATGATGACTACGGCTGTCACACCAAATCATCATGTCGCTTCCATCATTGCTGTGAGGTGGAATAAGTTGGTTCAAAGGCCTTATGAGAATGGTGATCCAAGAGCCCTGAAATTGGTCAAGGCCATTTTGAGGACACTGATGTTAAGAAGAATGAAGGAAACAAAGGATAAACAGGGAAGAGTTGGTGGCGTGGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGATCTATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATAGGACAAAAGCGAAGAGTTATTGTTAGAAGATTCATCGTGAAGGACACAGTGGAAGATCGTTTGCAACAAGTGCAAGCCAAGAAACAGAGGATGATATCTGGTGCCCTCACTGATGATGAGTCTTTTAGATCTACAATGAAGAAGCCAGTTTTGTATAGGTTGGGTTCTACTAGGACTAATGAAGAAGCCAGTTTTGTGTGGTCTGAACATTCAGAAAAGAAAGAAGCACACTGTTTTGTAAATCTTGAGGCGTTAGTAGTTATAGTCAAAGACAATCCAGATCCTTCGAATCGATTCCTCAAAACACTGTGCACACAGTCGTCAATGGATATCCTTGCTAAATCTTTCACCATCAGCTTCTACTCTAATGTTCAGGAGCGTTGTGTCCTTTACGATGATTGTTCTTCTCCCACAGCTACTGATACAAGGGTAAAACTTGCATATGCCATTGCAAGACCATGGTTTGGTGTGTATATCACTCCCGAGGCACCAGTTGCACTCTGTTTATCCAGTCATCTTTTGTGGAACTATGTGGATCACCATGTCAGTACTAGGGAGCAGATTACACTGCAAGATACAATGGAGGGTGTGGTTTACACAACTTCACAGTTTGGACTGGATGAGCGCTTTGGAGATGGTGATGCTTCTCAAATTGGTTTAGACCTAGATGAGGATGAGCTTGTGAGAGACCAGAGTTCATCTTCTTTTAAGCCATCTGGAAAGCATGATATATTGACCCAGACTTTGGGAACCCCAGAGCACAGTGGAAGATCACACAAATTGAAGGACCTGGCTGCTAACGTCATTGTACAAGACCTGCTCCTTGGCGTCCCTTGA 1212 0.4249 MGSFVWTVDRFIWYLFFMYFTMLYFTFYGMMTTAVTPNHHVASIIAVRWNKLVQRPYENGDPRALKLVKAILRTLMLRRMKETKDKQGRVGGVGLNLTAASNVFIMDLWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVKDTVEDRLQQVQAKKQRMISGALTDDESFRSTMKKPVLYRLGSTRTNEEASFVWSEHSEKKEAHCFVNLEALVVIVKDNPDPSNRFLKTLCTQSSMDILAKSFTISFYSNVQERCVLYDDCSSPTATDTRVKLAYAIARPWFGVYITPEAPVALCLSSHLLWNYVDHHVSTREQITLQDTMEGVVYTTSQFGLDERFGDGDASQIGLDLDEDELVRDQSSSSFKPSGKHDILTQTLGTPEHSGRSHKLKDLAANVIVQDLLLGVP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01172 403 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 35 85 - -
Rops8g01172 403 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 172 IPR027417 -
Rops8g01172 403 Gene3D - 72 210 IPR027417 -
Rops8g01172 403 SMART helicmild6 43 126 IPR001650 -
Rops8g01172 403 MobiDBLite consensus disorder prediction 357 379 - -
Rops8g01172 403 CDD SF2_C_SNF 89 137 - -
Rops8g01172 403 MobiDBLite consensus disorder prediction 356 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01172 Rops-Chr8 25473738 25488814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01172 49 88 RAD5 or RAD16-like Gene Family AT5G43530 77.500 6.79e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01172 K15505 - gmx:100806677 140.969