Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01143 ATGGCTGTGGTGAGTCCTGTGCCTGCAATAACACCAAGGACCGGTTCTGTGAGTTCGGTTCGTGAAATTGGGGGAGAAATTGTTGAAGAGCCTAATCCATCTATGGTTGATGAACCAATCTATGTTGCTGTAGCAAAGGAAGTAAAAGAGAGCAAATTGAATCTGATATGGGCAATTCAGAACTCTGGAGGAAAGAGGATCTGCATCCTCTATGTTCATGTGCCGGCTACTATGATCCCTTTGAGTATATTGGGTGCGAAATTTCCTGCGAGTTCACTGAAAGAGCAGGAAGTCCGAGCATTCCGGGAATTTGAAAGGCAACACATGCACAAGACTTTGGATGAATATCTCAGTATCTGTCAAAGGATGGGGGTGCGAGCAGAGAAACTGCATATTGAAATGGAGAGCATTGAAAAAGGAATTTTAGAACTTATCTCCCAGCATGGAATCCGAAAGCTTGTTATGGGAGCTGCATCTGATAAGTACTATTCTAGGAAAATGGTGGACCTCAGATCAAAGAAAGCCATCTATGTATGTGAACAAGCTCCAGCTTCTTGTCATGTACAGTTTATCTGCAAAGGACACCTTATACACACGAGGGATCGCAGTTTGGATGATCGTAATGTAGAGGTCACATCTCCTTTGGTGCAGCGAGTGCCAAACTCCGTGAGGTCTTTGAGATCTCAATCTATTACACTGGGGCAAAACCATCAAGCAAATCCAGCTCAAGAGTTATTTCGCAGAGTAAAGTCTGCCAATGATGGACAGATAACAAGCATTTTGGCTGTTTCTTCTCCCGACGACACTGAAGGGTCTTCAACTCCACGCAACCGGATCGGTACAGCAAGTTCTGATGAATCAGATAGGCTATCAAAGATGAGTCCTTCAGGATTGTCAACATGCTCTGATGGTGCAGTTGAACCAGCATTGAACCCAAATTTGATTACTGAGAGCAGTGAGAATGTATTAGAGTCAACTTTGAGTCGCCTGAGTAAAGAAGATCTTCGTCATTCCTCTCCTCCTAGTGTACTGCAGGATGGTGGAATGAATGATGCTCTCTATGACCAACTTGAACAGGCTATGGCTGAGGCTGAGAATGCTAGGCGAAATGCATATCAAGAAAGTTTTAGGCGTGGAAAAGCTGAAAAAGATGCCATTGAAGCAATACGCAGGGCTAAAGCTTCTGAAAGTTTATATACAGAGGAGTTGAACCTGAGGAAATTGGCAGAGGAAGAACTGAAGAATGAACAAGAAGAACTTGAGAATACGAAGAGCCAAATAGACAAGGTTAAGGAAGAACTCCAACTTGCTCTTGATCAGAAGTCATCGATAGAGAGTCAGATTGCATCATCTGAACTTACGATAAAGGAGTTGGAGCAGAAAATTATATCTGCTGTGGATCTGTTACAAAGCTACAAGAATGAACGAGATGAATTGCAGATGCAGCGTGATAATGCATTGAGAGAGGCTGAAGAGTTGAGGAAAAAACAAGGAGAGGCCTCGAGCACCCATATACCTCAATTGTTCTCAGAATTCTCTTTTCAAGAGATTGAAGAAGCGACAAGTAACTTCAATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTGCTTTGCGTCACACTGAAGTGGCTATAAAAATGTTGCACTCGAACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTATTGAGCAAGCTAAGGCATCCCAATCTTATCACACTTATAGGAGCTTGCCCAGAATCTTGGACTCTTGTCTATGAGTATTTGCCTAATGGAAGCCTTGAAGACCGTCTTGCCTGCAAGGATAACACACCTCCATTATCATGGCAAACTCGGATTCGCATTGCTGCAGAACTGTGCTCAGCTCTCATCTTTCTCCATTCCTGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCCAATATTCTCCTAGATGCAAACCTTATTAGCAAGCTTAGTGACTTTGGAATCTGTCGTATATTATCTCATTATGAGAGTTCTAGTAATAATAATACACAGTTTTGGAAAACTGATCCAAAGGGAACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCAGGGGAACTTACTCCAAAGTCAGATATTTATTCATTTGGAATAATATTATTGAGATTGTTGACTGGGAGACCAGCCTTGGGAATTACAAAGGAAGTGAAATATGCAGTAGATACTGGAAAGTTGAAATCTTTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAGTTGGCTCGCTTGGCTTTGAGGTGTTGTGAGATGAATCGAAAGAGCCGACCGGATCTTTATTCGGATGTATGGAGGATACTGGATGCAATGAGGGCTTCTTCTGGAGGCACAAATTCCTTTGGACTAAGTTCTGAAGGGCTTTGCCAACCTCCTTCATATTTTATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATAAGAGGATGGCTTGACAGTGGTCATGACACTTCACCAATGACAAATAGTAAGCTTGTACATCAGAACCTTGTTCCCAACCGTGCTCTTCGCTCTGCAATCCAAGACTGGCTTCAAAGTCACTGA 2649 0.4285 MAVVSPVPAITPRTGSVSSVREIGGEIVEEPNPSMVDEPIYVAVAKEVKESKLNLIWAIQNSGGKRICILYVHVPATMIPLSILGAKFPASSLKEQEVRAFREFERQHMHKTLDEYLSICQRMGVRAEKLHIEMESIEKGILELISQHGIRKLVMGAASDKYYSRKMVDLRSKKAIYVCEQAPASCHVQFICKGHLIHTRDRSLDDRNVEVTSPLVQRVPNSVRSLRSQSITLGQNHQANPAQELFRRVKSANDGQITSILAVSSPDDTEGSSTPRNRIGTASSDESDRLSKMSPSGLSTCSDGAVEPALNPNLITESSENVLESTLSRLSKEDLRHSSPPSVLQDGGMNDALYDQLEQAMAEAENARRNAYQESFRRGKAEKDAIEAIRRAKASESLYTEELNLRKLAEEELKNEQEELENTKSQIDKVKEELQLALDQKSSIESQIASSELTIKELEQKIISAVDLLQSYKNERDELQMQRDNALREAEELRKKQGEASSTHIPQLFSEFSFQEIEEATSNFNPSLKIGEGGYGSIFKGALRHTEVAIKMLHSNSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLACKDNTPPLSWQTRIRIAAELCSALIFLHSCKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSHYESSSNNNTQFWKTDPKGTFVYMDPEFLASGELTPKSDIYSFGIILLRLLTGRPALGITKEVKYAVDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCEMNRKSRPDLYSDVWRILDAMRASSGGTNSFGLSSEGLCQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSKLVHQNLVPNRALRSAIQDWLQSH* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01143 882 MobiDBLite consensus disorder prediction 312 326 - -
Rops8g01143 882 Gene3D Phosphorylase Kinase; domain 1 493 596 - -
Rops8g01143 882 Gene3D Transferase(Phosphotransferase) domain 1 597 801 - -
Rops8g01143 882 ProSiteProfiles U-box domain profile. 811 882 IPR003613 GO:0004842|GO:0016567
Rops8g01143 882 Coils Coil 350 374 - -
Rops8g01143 882 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 63 159 - -
Rops8g01143 882 SUPERFAMILY RING/U-box 806 881 - -
Rops8g01143 882 Pfam Protein kinase domain 528 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01143 882 CDD RING-Ubox_WDSUB1-like 813 868 - -
Rops8g01143 882 ProSiteProfiles Protein kinase domain profile. 524 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01143 882 MobiDBLite consensus disorder prediction 261 301 - -
Rops8g01143 882 SMART serkin_6 524 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01143 882 MobiDBLite consensus disorder prediction 261 349 - -
Rops8g01143 882 SUPERFAMILY Protein kinase-like (PK-like) 501 782 IPR011009 -
Rops8g01143 882 CDD STK_N 39 194 - -
Rops8g01143 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Rops8g01143 882 PANTHER OS02G0152300 PROTEIN 40 877 - -
Rops8g01143 882 ProSitePatterns Protein kinases ATP-binding region signature. 530 551 IPR017441 GO:0005524
Rops8g01143 882 Pfam U-box domain 813 882 IPR003613 GO:0004842|GO:0016567
Rops8g01143 882 Coils Coil 399 496 - -
Rops8g01143 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 811 882 IPR013083 -
Rops8g01143 882 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 497 596 - -
Rops8g01143 882 SMART Ubox_2 815 878 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01143 Rops-Chr8 24108948 24114882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01143 1 882 U-box Gene Family AT2G45910 55.568 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Rops8g01143 Pkinase 5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01143 - - gmx:100807515 1440.63