Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01121 ATGTTGGGTAGTGAGCAACATTTGGATTTGCATAAGCTCTTCATGATGGTGAAGGAGAAAGGTGGTTATGATGCTGTTTGTAAGAACAAGTTGTGGGATTCGGTGGGGGAAGAATATGGTTTAGGTGTGAAGGATGGTTCTTCTGTGAAACTGGTTTACAGTAAGTACTTGAGTGCTCTAGAGACATGGCCGAAGAATGTTGCTGACAGTAAGTTCTCTGAGTGTAAATTTGGCCAGTGTTTGATGGAGGTGCAATCTGAATTCTTGTTGGATGATTATGGTGAGGAAGAGGTGGAGGATGAACTCAAGGGTAAATATAACTACCTAGATGGGAGGAAGTTGTGTGGTACTCATAGAGTGAAGTGCAAGAATCCAGATTCAAATGGGGCCGAACTCGACAGGGTATATGACTACCTAGATGGTAGGATATTATGTGGTACTAATAGACTGAAGGGCATGAATCTGGAGCCTGATGGGGCTAAGAAAGTTAAGAATGGAGGACTTGTTGATTTTAACATGCAGGACCATAGGATGAATGAGCCTAGTCTCATAAACATGCCCAACCATAATGCTGCAATGGAAATACTGGAAGAATTTGATGGAGGGAAAATATTAGCAGTGGATGTATCCGATGCAGTAAACATGTCTGAATTATCATGTGGAGGCAAGAGGTGTGAAAATGGTGATGATAATGATGATGACGATGTCATGATATTGGATCCATCCAGTGTTAATAAAGAGAGCTTTGGTTGTAAGAGGAAGAGAGAGTCTATGTCGGAAATGCTAAGCTGGGTTACTGCTATTGCAAAGAATCCTTGTGATCCTGCAGTTGGCTCATTGCCTGAAAAGTCAAAGTGGAAGTCCTACAGTAATCAAGAGATTTGGAAGCAGGTTTTGTTGCTTCGAGAAGCTGTCTCTCTGAAGAAAGATTTTGAATTAAGCAGTGAACAACGTAGTTGGCAGGGACAGAAGATGCATCCTTCCATGTATGATGATCACCTCGGGGCAACTTACAATCTTAGACAGAGGGACAAATGTGACAAGAGGCTTTTATTTGGAAAATCTACAGTGGATGGAATCTCTTCAGATTCATCTGGTGGAACACAGGGCGGTTTGAAGAGAACCCCAAGTCCTCGCACTGAAGATTGTGCTAAGAAATCACTTGACTCCACTACTGCACACTCAAGTTTTGATAGATGTAGCACAGTGCACATTCCTCTGGGGCCAACCCATCAAGCTGAAGTGCCTGAATGGACTGGCATGACTTATGAGAGTGATTCTAAGTGGTTGGGGACCCATATATGGCCATTAAAAACTGTAAATTCCAAACTTATTGAAAGGGACCCCATTGGAAAGGGAAGACAAGATTCATGTGGTTGTCAAGTACAAGGTTCTGTTGAGTGTGTCCGATTCCACGTTGCCGAGAAAAGGGCTAAAGTTAAGATGGAATTAGGTGTAGCATTTTACGAGTGGAATTTACATAATGTTGGCGAAGAAGTTAGGCGTTTGTGGACAGAGCAAGAAGAAAAGAAGTTCCAAGATGTGGTGAAATCAAACCCTCCTTCACTTGATATATGTTTTTGGGATCATATTTTTAGAACGTTTCCTATGAAGAGCAGGGAAAATTTAGTCAGCTACTACTTCAATGTCTTTCTTTTGCAGCGTAGAGGATACCAGAATAGGCATACTCAAGATAACATTGACAGTGATGATGATGAATCAGAATTTGGACCATTGAGGAATGTTTTTGGACATCAAACACATAAATCACGCAACTTCACCTTATTATCCCCTAAGAAGCCACAGACAAAGGGAAGATAG 1821 0.4168 MLGSEQHLDLHKLFMMVKEKGGYDAVCKNKLWDSVGEEYGLGVKDGSSVKLVYSKYLSALETWPKNVADSKFSECKFGQCLMEVQSEFLLDDYGEEEVEDELKGKYNYLDGRKLCGTHRVKCKNPDSNGAELDRVYDYLDGRILCGTNRLKGMNLEPDGAKKVKNGGLVDFNMQDHRMNEPSLINMPNHNAAMEILEEFDGGKILAVDVSDAVNMSELSCGGKRCENGDDNDDDDVMILDPSSVNKESFGCKRKRESMSEMLSWVTAIAKNPCDPAVGSLPEKSKWKSYSNQEIWKQVLLLREAVSLKKDFELSSEQRSWQGQKMHPSMYDDHLGATYNLRQRDKCDKRLLFGKSTVDGISSDSSGGTQGGLKRTPSPRTEDCAKKSLDSTTAHSSFDRCSTVHIPLGPTHQAEVPEWTGMTYESDSKWLGTHIWPLKTVNSKLIERDPIGKGRQDSCGCQVQGSVECVRFHVAEKRAKVKMELGVAFYEWNLHNVGEEVRRLWTEQEEKKFQDVVKSNPPSLDICFWDHIFRTFPMKSRENLVSYYFNVFLLQRRGYQNRHTQDNIDSDDDESEFGPLRNVFGHQTHKSRNFTLLSPKKPQTKGR* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01121 606 SUPERFAMILY ARID-like 5 69 IPR036431 GO:0003677
Rops8g01121 606 Gene3D - 2 76 IPR036431 GO:0003677
Rops8g01121 606 Pfam ARID/BRIGHT DNA binding domain 5 61 IPR001606 GO:0003677
Rops8g01121 606 MobiDBLite consensus disorder prediction 563 606 - -
Rops8g01121 606 SMART bright_3 2 66 IPR001606 GO:0003677
Rops8g01121 606 SMART ELM2_2 405 455 IPR000949 -
Rops8g01121 606 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 601 - -
Rops8g01121 606 MobiDBLite consensus disorder prediction 360 388 - -
Rops8g01121 606 CDD SANT 504 551 IPR001005 -
Rops8g01121 606 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Rops8g01121 606 MobiDBLite consensus disorder prediction 585 606 - -
Rops8g01121 606 CDD ARID 8 61 - -
Rops8g01121 606 MobiDBLite consensus disorder prediction 360 375 - -
Rops8g01121 606 MobiDBLite consensus disorder prediction 563 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01121 Rops-Chr8 23804948 23808916 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops8g01121 ARID 2.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01121 - - gmx:100780550 838.565