Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01103 ATGAAGAACCCTAGTCTCCAAAACATGCGCAACAATGATGCTGCAATGGAAATATTGGAAGAAGTTGATGGAGGCAGAATGTTTGCAAATGATGTAAACAAAGACAGCTTTGGTCGTAAGAGGAAGATTGAGTCTATGTTCGAAATGCTAAGCTGGGTTACTGCCATTGCCAAGAATCCTTGTGACCCTGCAGTTGGCTCATTGCCTCGAAAGTCAAAGTGGAAGTCTTATAGTAACCAAAAGATCTGGAAGCAGGTTTTGTTGTTTCGAGAAGTTGTCTCTTTGAAAAATGGTTTTGAATCAAGTAGAGAACAGAGTTGGCAGGGTCAGAAGATACATCCTTCCATGTATGATGACTACCAGCCTGCGATAACTTACAATCTAAGACTGAGGGTAAAATGCGACAAGAGACTTTTATCTGGAAAGTCTACATTTGATGAAGTTTCTTCAGATTCATCTGAAACACACTCAAGTCTTGATAGATGTCGCACAGTGCAAATTCCTCTGGGACCAACCCATCAAGCTGAAGTATCTGAATGGACTGGCATGACTTATGAGAGTGATTCTAAGTGGTTGGGGACCAAAATATGGCCATCAAAAACAAGAATTTTCCAACTTCTAGAGAAGGACCCCGTTGGAAAGGGAAGAGAAGATTCATGTGGTTGTCAAGTAGAAGGATCTGTTGAGTGTGTCCAATTCCACATTACTGAGAAAAGGGCTAAAGTTAAGTTGGAATTGGGTGTGGCATTTTACCAATGGAATTTACACAATGCAGGTGAAGACGTTAGGCGTCTATGGACTCAACAAGAAGAGAAGAGGTTCGAAGATGTGGTGAAATCAAACCCCTCTTCACTCGGTAGATGTTTCTGGGATCATATTTTCAGAACATTTCCAGATAAAAGCAGGGAAAATCTAGTCAACTACTACTTCAATGTCTTTCTTTTGCAGCGCAGAAGATACCAGAATAGGCATACTAAAAATAAAATTGACAGTGATGATGAAGAATCGGAATTTGTACGACGGAGGAATGTTTTTGGACGTGAAACAAAGAAAACATGCAGCTTCACCTTATCCGTAAAGAAGCCACAACGAAAGGGAAAATAG 1104 0.4058 MKNPSLQNMRNNDAAMEILEEVDGGRMFANDVNKDSFGRKRKIESMFEMLSWVTAIAKNPCDPAVGSLPRKSKWKSYSNQKIWKQVLLFREVVSLKNGFESSREQSWQGQKIHPSMYDDYQPAITYNLRLRVKCDKRLLSGKSTFDEVSSDSSETHSSLDRCRTVQIPLGPTHQAEVSEWTGMTYESDSKWLGTKIWPSKTRIFQLLEKDPVGKGREDSCGCQVEGSVECVQFHITEKRAKVKLELGVAFYQWNLHNAGEDVRRLWTQQEEKRFEDVVKSNPSSLGRCFWDHIFRTFPDKSRENLVNYYFNVFLLQRRRYQNRHTKNKIDSDDEESEFVRRRNVFGRETKKTCSFTLSVKKPQRKGK* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01103 367 CDD SANT 266 313 IPR001005 -
Rops8g01103 367 Pfam Myb-like DNA-binding domain 265 312 IPR001005 -
Rops8g01103 367 SUPERFAMILY Homeodomain-like 265 313 IPR009057 -
Rops8g01103 367 Gene3D - 266 340 - -
Rops8g01103 367 SMART ELM2_2 167 217 IPR000949 -
Rops8g01103 367 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 31 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01103 Rops-Chr8 23441070 23443021 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops8g01103 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01103 - - gmx:102667655 455.677