Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01101 ATGGGAGGTTGCTGTTGTTCTGCTAGAAAACCTCATCTGCAAGGAACACCAGTGTATTACTATTGCTCACAAACTTTTGAAGAGCGTGAATCTTTAACCGCGAATGATGGTACAACTGCTTCACTCAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGCATCCATACCTGATACTTTCCATCCCCCTCCTGTGCCTCTACCTTATGATGTGGTCTTGGGAGGTTCTGCATCAACAGATTCTGAGTCTGGCAGAAAAACAGTTAGTGTTAGTAGTTTTGAAACTTTAATTACAAGTGAAGATGTAGAAGAATCAGATTGTAAAGCTCAAGCCAATTCTGCACCTATATCTCCAGGCAAGGAAAAACTATCAAAATCAAATGGAACTCAAGTATTAGTGACAGAAGAAGAGGATGTCTGCCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAAATCTGACAAAATGCGAACACCATTTTCACCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGA 561 0.3993 MGGCCCSARKPHLQGTPVYYYCSQTFEERESLTANDGTTASLNAGFLVGLNLEASIPDTFHPPPVPLPYDVVLGGSASTDSESGRKTVSVSSFETLITSEDVEESDCKAQANSAPISPGKEKLSKSNGTQVLVTEEEDVCPICLEEYDVENPKNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01101 186 SMART ring_2 140 180 IPR001841 -
Rops8g01101 186 SUPERFAMILY RING/U-box 134 184 - -
Rops8g01101 186 CDD RING-H2_AIRP1-like 136 184 - -
Rops8g01101 186 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Rops8g01101 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 185 IPR013083 -
Rops8g01101 186 Pfam Ring finger domain 139 180 IPR001841 -
Rops8g01101 186 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Rops8g01101 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01101 Rops-Chr8 23371578 23374098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01101 1 186 C3H Transcription Factor Family AT4G00335 59.140 8.87e-76 223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01101 8 23371578 23374098 Rops8g01101 8 23371578 23374098 ECH
Rops8g01101 8 23371578 23374098 Rops4g01505 4 37913386 37917641 PCT