Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01082 ATGAAAATGCAAGCTTGTACGTTGTCTCAAGCATCTTCTCCTTCCAGGTCATGGAGATACGATGTGTTTTTGAGTTTCAGGGGAGAAGACACTCGGAAACGCTTCACTGATCATCTGCTAGCTGCATTGGAAAGAAAAGGAATCACAACATTCATGGATGAGAAATACATTGAGAAAGGAGAACACATATCAAAAGTGCTCCTCAAAGCCATTGAGGAATCTATGTTTGCCATTATCATTCTCTCACCAAACTATGCTTCATCCACTTGGTGTTTGGACGAGCTCCAAAAAATTGTTGAGTGCAAAAACAGCCTCGGTCTAACAGTTATACCGGTTTTCTTTGACGTTGACCCCTCTGATGTGAGGCATCAAAGAGGAAGCTTTGGGGAAGCCTTCAGAAAACACGAAGAGGATTTCCAACGAGACAAGGTTGAAAGATGGAGAGATGCTTTAAGACAAGCTGCTAGTTATTCTGGTTGGGACTCCAAGGATTGGTACGAGGCAAAACTCGTGGAAAGCATTGCTCAAGACATACATAAAAAGCTGACTCTTAAATTGCCATCTTGGACAGAGAACCTTGTTGGGGTTGCTACAAGGGTGGAGAAAGTGAACAAGCTCATATTGAATCACGTTCGCTTTATAGGTATATGGGGCATAAGTAAGACAACTACTGCTAGAACTCTCTATGAAGCAATAAAAGGTAATTTTGAAGTTACTTGCTTTCTTGAGAACGTTGGAGAGCTATGTGAGACAAAAGGTTTAGTTCACTTGCAAAAAAAACTTCTTTCTCATCTTAATATAAGTTGGAGTGAGTTTTCTAATTTGCATGATGGGAGAAAGACAATACAAAACTCTTTGTGCAGCAGGAAGGTTCTTGTCGTTCTTGATGATGTAAATGAAGTTAGCCAATTGGAGAATTTGGCTGGGAAGAAATATTGGTTTGGTCCTGGAAGTAGAGTTATAGTCACAACAATAGATATACACCTGCTGAAGATACATGGAGTGCATGGAATTTATGAGGTTGGAGGCTCAGTAAAAAATGAAGAAGGGTATTTGGATTTGCCTAAAGAGTTCTTGATCTTCATCATCCAGTCTGCATCGTTGTTTCCTAGGTTCACCTCCACTCGGACTCAATTCTCACATAAATTCATGGATAAATATTTTCCTCCCTCCAAATTTGTTAAATTAAGAAATAACATATTTGCACCAGAGATCAAAGAAAAAAACTTTGTTGGTAATCCCAGAAGAGAGAGATATGATCCACATTCAAGTACCTACAATTATAGCTGGAGGGACCGTCTAAATCACTCTTGGGGTAATCTAGAAAACACTCACCATTCTCCACAACAGCATGCTCCAAGTCACAAAGCACCTGAGTGGAAGTCCAGTCTCCAAGATACCACTATGCCATACATTAATAAAAATAAAACTAGACTTCAAAGCCATGAAGAAACCATGAAAAGTTTGAAGACTCAAATTAGACAACCTGCTAACCTTCCAAGAGTTCAAGGCTCCCTACCTTGGAAGACAAAGCCTAGCCCCAATGAGCAAGTCAATACGATAACATCTAGGAGTGGAAACCTGATGCAAACATCTACAACTTTCATGAGAGTTCTATGTCTAATTCAGAAGCTTAGATGA 1641 0.3979 MKMQACTLSQASSPSRSWRYDVFLSFRGEDTRKRFTDHLLAALERKGITTFMDEKYIEKGEHISKVLLKAIEESMFAIIILSPNYASSTWCLDELQKIVECKNSLGLTVIPVFFDVDPSDVRHQRGSFGEAFRKHEEDFQRDKVERWRDALRQAASYSGWDSKDWYEAKLVESIAQDIHKKLTLKLPSWTENLVGVATRVEKVNKLILNHVRFIGIWGISKTTTARTLYEAIKGNFEVTCFLENVGELCETKGLVHLQKKLLSHLNISWSEFSNLHDGRKTIQNSLCSRKVLVVLDDVNEVSQLENLAGKKYWFGPGSRVIVTTIDIHLLKIHGVHGIYEVGGSVKNEEGYLDLPKEFLIFIIQSASLFPRFTSTRTQFSHKFMDKYFPPSKFVKLRNNIFAPEIKEKNFVGNPRRERYDPHSSTYNYSWRDRLNHSWGNLENTHHSPQQHAPSHKAPEWKSSLQDTTMPYINKNKTRLQSHEETMKSLKTQIRQPANLPRVQGSLPWKTKPSPNEQVNTITSRSGNLMQTSTTFMRVLCLIQKLR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01082 546 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 363 IPR044974 GO:0006952
Rops8g01082 546 Gene3D - 183 336 IPR027417 -
Rops8g01082 546 ProSiteProfiles TIR domain profile. 18 182 IPR000157 GO:0007165
Rops8g01082 546 SMART till_3 19 157 IPR000157 GO:0007165
Rops8g01082 546 MobiDBLite consensus disorder prediction 441 461 - -
Rops8g01082 546 Pfam TIR domain 20 188 IPR000157 GO:0007165
Rops8g01082 546 MobiDBLite consensus disorder prediction 508 525 - -
Rops8g01082 546 MobiDBLite consensus disorder prediction 502 525 - -
Rops8g01082 546 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 184 - -
Rops8g01082 546 Pfam NB-ARC domain 210 335 IPR002182 GO:0043531
Rops8g01082 546 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 160 IPR035897 -
Rops8g01082 546 Coils Coil 472 492 - -
Rops8g01082 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 343 IPR027417 -
Rops8g01082 546 Gene3D - 16 182 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01082 Rops-Chr8 23008881 23011374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01082 15 418 WRKY Transcription Factor Family AT4G12020 26.636 6.23e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01082 - - ahf:112797505 432.95