Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01078 ATGAAAATGCAAGCTTGTACGTTGTCTCAAGCATCTTCTCCTTCCAAGTCATGGAGCTACCATGTGTTTTTGAGTTTCAGGGGAGAAGACACTCGGAAACGTTTCACTGATCATCTGCTTGCTGCATTGGAAAGAAAAGGAATCACAACATTCATGGATGAGAAAGACATTGAGAAAGGAGAACACATTTTATCAGAGCTCCTCCAAGCTATTGAGGAATCTATGTTTGCCATTATCATTCTCTCACCAAACTATGCTTCATCAACTTGGTGTTGGAACGAGCTCCAAAAGGTTGTTGAGTGCAAAAACAGCCTCGGTCTAACAGTTATACCGGTTTTCTATGAAGTTGACCCCTCTGATGTGAGGCATCAAAGAGGAAGCTTTGGGGAAGCCTTCAGAAAACATGAACAGTATTTCCAACGAGACAAGGTTGAAAGTTGGAGAGATGCTTTAAGACAAGCTGCTAGTTATTCTGGTTGGGACTCCAAGGATTGGTATGAGGCAAAACTCGTGGAAAGCATTGCTCAAGACATACATAAAAAGCTGACTCTTAACTTGCCATCTTGTTCAGAGAACCTTGTTGGAATTGTTACAAGGGTGGAGGAAGTGAACAAGCTCATATGTATGGGGTTGGATGACGATCGATTTATAGGCATAGGTAAGACAACTATTTCTAGAGTTGTCTATGAAGAAGCAATAAAAGGTAATTTTGAAGTTACTTGCTTTCTTGAGAACGTTGGAGAGCTATCTGAAACAGAATGTTTAGTTCACTTGCAAAAAACACTTCTTTCTCATCTTAATGTAAATTGGAGTGATTTTTCTAATTTGCATGATTGGAGAAAGACAATGCAAAACTCTTTGAGCAGCAGGAAGGTTCTTGCTTTTGATGATGAAAATGAAGTAAGCCAATTGGAGAATTTGGGTGGGAAGAAATATTGGTTTGGTCCCGGAAGAAGAGTAATAGTCACAACAAGAGATATACACCTGCTGAAGATACGTGGAGTGCATGGAATTTATGAGGTGGGAGGCTCAGTCCAAAATGAAGAAGGGTATTTGGATTTGTCTAAAGACGTGGTCAAATATAGTGGCGGTCATCCATTGGCACTTGAGTTCTTGATCTTCTTCATCCAGTCTGCTTTGATCTTCATGATCCATTCATTGATACAATTTGTGGGACGTTGGCTTGTAAAGTTTACTGTTTGCCCCTCTAGTGCTTAG 1218 0.4031 MKMQACTLSQASSPSKSWSYHVFLSFRGEDTRKRFTDHLLAALERKGITTFMDEKDIEKGEHILSELLQAIEESMFAIIILSPNYASSTWCWNELQKVVECKNSLGLTVIPVFYEVDPSDVRHQRGSFGEAFRKHEQYFQRDKVESWRDALRQAASYSGWDSKDWYEAKLVESIAQDIHKKLTLNLPSCSENLVGIVTRVEEVNKLICMGLDDDRFIGIGKTTISRVVYEEAIKGNFEVTCFLENVGELSETECLVHLQKTLLSHLNVNWSDFSNLHDWRKTMQNSLSSRKVLAFDDENEVSQLENLGGKKYWFGPGRRVIVTTRDIHLLKIRGVHGIYEVGGSVQNEEGYLDLSKDVVKYSGGHPLALEFLIFFIQSALIFMIHSLIQFVGRWLVKFTVCPSSA* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01078 405 Pfam TIR domain 20 195 IPR000157 GO:0007165
Rops8g01078 405 Gene3D - 182 335 IPR027417 -
Rops8g01078 405 Pfam NB-ARC domain 218 330 IPR002182 GO:0043531
Rops8g01078 405 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 184 - -
Rops8g01078 405 ProSiteProfiles TIR domain profile. 18 182 IPR000157 GO:0007165
Rops8g01078 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 376 IPR027417 -
Rops8g01078 405 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 373 IPR044974 GO:0006952
Rops8g01078 405 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 160 IPR035897 -
Rops8g01078 405 Gene3D - 13 181 IPR035897 -
Rops8g01078 405 SMART till_3 19 157 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01078 Rops-Chr8 22963635 22965888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01078 15 372 WRKY Transcription Factor Family AT4G12020 25.648 2.29e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01078 - - aprc:113861574 424.861