Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01074 ATGGGGTTGCTCTTGTTTTGCTCTTTGCTTTTTGTTTTAGCTTCTGCTTCATCCAGAAACTTGCCCATTATTGCCTTTGATGAAGGGTACACACATTTGTTTGGGGAAAATAACTTGGTCGTTCATAAGGATAGGAGATTGGTTCATCTTTCACTTGATGAGAGAACAGGTTCCGGGTTTGTGTCTCATGATCTTTACCTTCATGGATATTTCAGTGCTTCGATTAAGTTTCTTGCTGATTACACTGTTGGAGTTGTGGAAACATTAGAGGCAAAGCCTGAGGATGCAGTTGTTAATGTGCCATGTTCTGGTGGGGTTGCTATAAGACCTCCATTTTATTGTCCACCCCCAGGGTCCATGGTTGGTCCAAGCTACCCAGGTCCTGCACCCGTATGGTGTGTGCCTATGCCACCACCTGACTCCATTAGGGGACCCTATCATTCGAACTTGGTTCCATATCTTGTCAACCCAGAATCTCAGCCACACCTCCCACATTGTTGTCGAGTTTGCTGGGTTCGTGATCAAGATTGGCAGGTATTCGAGATGATGGATCACCAATCTGGTCAAGGATTTGATTCAGATGGTAGTGACCTTGATATGCAAGCAGAAATTAGTGAGAAACATGAGAAATTAGAAATTGTGTTTTCAAAAGATTTAGAATTATGTGCAGTGGAAGATGAAAAGTTTGTTGAACAATCTGTAGCAAATACAGAAGCTTTAGAACCATTCATTGGCATGCAGTTCAGTTCAAGGGAGGAAGCCAGAGAATTCTACATTGCCTATGGTAGGCGGATAGGATTTACAGTACGAATACACCATAACCGTCATTCACGAGTGAATAACCAGGTTATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGCTTTCGTGCAAAAAAAAGTATGTACACAGAAAAGATAGAGTGCTCCCTCCTCCACCAGCCACCCGAGAAGGTTGTCAGGCCATGA 966 0.4306 MGLLLFCSLLFVLASASSRNLPIIAFDEGYTHLFGENNLVVHKDRRLVHLSLDERTGSGFVSHDLYLHGYFSASIKFLADYTVGVVETLEAKPEDAVVNVPCSGGVAIRPPFYCPPPGSMVGPSYPGPAPVWCVPMPPPDSIRGPYHSNLVPYLVNPESQPHLPHCCRVCWVRDQDWQVFEMMDHQSGQGFDSDGSDLDMQAEISEKHEKLEIVFSKDLELCAVEDEKFVEQSVANTEALEPFIGMQFSSREEAREFYIAYGRRIGFTVRIHHNRHSRVNNQVIGQDFVCSKEGFRAKKSMYTEKIECSLLHQPPEKVVRP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01074 321 Gene3D - 12 96 - -
Rops8g01074 321 Pfam FAR1 DNA-binding domain 256 304 IPR004330 -
Rops8g01074 321 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 190 300 - -
Rops8g01074 321 Pfam Glycosyl hydrolases family 16 29 88 IPR000757 GO:0004553|GO:0005975
Rops8g01074 321 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 86 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01074 Rops-Chr8 22895149 22896609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01074 3 86 Glycoside Hydrolase AT1G14720 61.176 4.04e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops8g01074 Glyco_hydro_16 7.4e-05 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01074 - - gmx:100810283 196.438