Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01067 ATGAAAATGCAAGCGTGTACGTTGTCTCAAGCATCTTCTCCTTCCAGGTCATGGAGATACGATGTGTTTTTGAGTTTCAGGGGAGAAGACACTCGGAAACGCTTCACTGATCATCTGCTAGCTGCATTGGAAAGAAAAGGAATCACAACATTCATGGATGAGAAATACATTGAGAAAGGAGAACACATATCAAAAGTGCTCCTCAAAGCCATTGAGGAATCTATGTTTGCCATTATCATTCTCTCACCAAACTATGCTTCATCCACTTGGTGTTTGGACGAGCTCCAAAAGATTGTTGAGTGCAAAAACAGCCTCGGTCTAACAGTTATACCGGTTTTCTTTGACGTTGACCCCTCTGATGTGAGGCATCAAAGAGGAAGCTTTGGGGAAGCCTTCAGAAAACACGAAGAGGATTTCCAACGAGACAAGGTTGAAAGATGGAGAGATGCTTTAAGACAAGCTGCTAGTTATTCTGGTTGGGACTCCAAGGATTGTGTTGGAAGCAACAGACATGAAAATGCAAGCTTGTACGTTGTCTCAAGCATCTTCTCCTTCCAGGTCATGGAGATACGATGTGTTTCTGAGTTTCAGGGAGAAGACACTCGGAAACGCTTCACTGATCATCTGCTAGCTGCATTGGAAAGAAAAGGAATCACAACATTCATGGATGAGAAATACATTGAGAAAGGAGAACACATATCAAAAGTGCTCCTCAAAGCCATTGAGGAATCTATGTTTGCCATTATCATTCTCTCACCAAACTATGCTTCATCCACTTGGTGTTTGGACGAGCTCCAAAAAATTGTTGAGTGCAAAAACAGCCTCGGTCTAACAGTTATACCGGTTTTCTTTGACGTTGACCCCTCTGATGTGAGGCATCAAAGAGGAAGCTTTGGGGAAGCCTTCAGAAAACACGAAGAGGATTTCCAACGAGACAAGGTTGAAAGATGGAGAGATGCTTTAAGACAAGCTGCTAGTTATTCTGGTTGGGACTCCAAGGATTGGTACGAGGCAAAACTCGTGGAAAGCATTGCTCAAGACATACATAAAAAGCTGACTCTTAAATTGCCATCTTGGACAGAGAACCTTGTTGGGGTTGCTACAAGGGTGGAGAAAGTGAACAAGCTCATATTGGATGACGTTCGCTTTATAGGTATATGGGGCATAAGTAAGACAACTACTGCTAGAACTCTCTATGAAGCAATAAAAGGTAATTTTGAAGTTACTTGCTTTCTTGAGAACGTTGGAGAGCTATGTGAGACAAAAGGTTTAGTTCACTTGCAAAAAAAACTTCTTTCTCATCTTAATATAAGTTGGAGTGATTTTTCTAATTTGCATGATGGGAGAAAGACAATACAAAACTCTTTGTGCAGCAGGAAGGTTCTTGTCGTTCTTGATGATGTAAATGAAGTTAGCCAATTGGAGAATTTGGCTGGGAAGAAATATTGGTTTGGTCCTGGAAGTAGAGTTATAGTCACAACAATAGATATACACCTGCTGAAGATACATGGAGTGCATGGAATTTATGAGGTTGGAGGCTCAGTAAAAAATGAAGAAGGGTATTTGGATTTGCCCAAAGAGTTCTTGATCTTCATCATCCAGTCTGCATCGTTGTTTCCTAGGTTCACCTCCACTCGGACTCAATTCTCACATAAATTCATGGATAAATATTTTCCTCCCTCCAAATTTGTTAAATTAAGAAATAACATATTTGCACCAGAGATCAAAGAAAAAAACTTTGTTGGTAATCCCAAAAGAGAGAGATATGATCCACATTCAAGTACCTACAATTATAGCTGGAGGGACCGTCTAAATCACTCTTGGGGTAATCAAGAAAACACTTACCATTCTCCACAACAGCATGCTCCAAGTCACAAAGCACCTGAGTCGAAGTCCAGTCTCCAAGATACCACTATGCCATACATTAATAAAAATAAAACTAGACTTCAAAGCCATGAAGAAACCATGAAAAGTTTGAAGACTCAAATTAGACAACCTGCTAACCTTCCAAGAGTTCAAGGCTCCCTACCTTGGAAGACAAAGCCTAGCCCCAATGAGCAAGTCAATACGATAACATCTAGGAGTGGAAAGCTGATGCAAACATCTACAACTTTCATGAGAGTTCTATGTCTAATTCAGAAGCTTAGATGA 2151 0.4059 MKMQACTLSQASSPSRSWRYDVFLSFRGEDTRKRFTDHLLAALERKGITTFMDEKYIEKGEHISKVLLKAIEESMFAIIILSPNYASSTWCLDELQKIVECKNSLGLTVIPVFFDVDPSDVRHQRGSFGEAFRKHEEDFQRDKVERWRDALRQAASYSGWDSKDCVGSNRHENASLYVVSSIFSFQVMEIRCVSEFQGEDTRKRFTDHLLAALERKGITTFMDEKYIEKGEHISKVLLKAIEESMFAIIILSPNYASSTWCLDELQKIVECKNSLGLTVIPVFFDVDPSDVRHQRGSFGEAFRKHEEDFQRDKVERWRDALRQAASYSGWDSKDWYEAKLVESIAQDIHKKLTLKLPSWTENLVGVATRVEKVNKLILDDVRFIGIWGISKTTTARTLYEAIKGNFEVTCFLENVGELCETKGLVHLQKKLLSHLNISWSDFSNLHDGRKTIQNSLCSRKVLVVLDDVNEVSQLENLAGKKYWFGPGSRVIVTTIDIHLLKIHGVHGIYEVGGSVKNEEGYLDLPKEFLIFIIQSASLFPRFTSTRTQFSHKFMDKYFPPSKFVKLRNNIFAPEIKEKNFVGNPKRERYDPHSSTYNYSWRDRLNHSWGNQENTYHSPQQHAPSHKAPESKSSLQDTTMPYINKNKTRLQSHEETMKSLKTQIRQPANLPRVQGSLPWKTKPSPNEQVNTITSRSGKLMQTSTTFMRVLCLIQKLR* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01067 716 SMART till_3 195 327 IPR000157 GO:0007165
Rops8g01067 716 SMART till_3 19 157 IPR000157 GO:0007165
Rops8g01067 716 FunFam Disease resistance protein (TIR-NBS-LRR class) 187 354 - -
Rops8g01067 716 Gene3D - 353 506 IPR027417 -
Rops8g01067 716 ProSiteProfiles TIR domain profile. 18 155 IPR000157 GO:0007165
Rops8g01067 716 MobiDBLite consensus disorder prediction 609 641 - -
Rops8g01067 716 Gene3D - 194 352 IPR035897 -
Rops8g01067 716 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 160 IPR035897 -
Rops8g01067 716 Coils Coil 642 662 - -
Rops8g01067 716 Pfam TIR domain 194 358 IPR000157 GO:0007165
Rops8g01067 716 Pfam TIR domain 20 158 IPR000157 GO:0007165
Rops8g01067 716 Gene3D - 13 186 IPR035897 -
Rops8g01067 716 Pfam NB-ARC domain 380 505 IPR002182 GO:0043531
Rops8g01067 716 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 195 516 IPR044974 GO:0006952
Rops8g01067 716 SUPERFAMILY Toll/Interleukin receptor TIR domain 196 330 IPR035897 -
Rops8g01067 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 513 IPR027417 -
Rops8g01067 716 ProSiteProfiles TIR domain profile. 188 352 IPR000157 GO:0007165
Rops8g01067 716 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01067 Rops-Chr8 22740749 22744318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01067 205 588 WRKY Transcription Factor Family AT4G12020 26.781 5.99e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01067 - - msyl:126586109 433.721