Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01062 ATGGGGTTGCTCTTGTTTTGCTCTTTGCTTTTTGTTTTAGCTTCTGCTTCATCCAGAAACTTGCCCATTATTGCCTTTGATGAAGGGTACACACATTTGTTTGGGGAAAATAACTTGGTCGTTCATAAGGATGGGAGATTGGTTCATCTTTCACTTGATGAGAGAACAGGTTCCGGGTTTGTGTCTCATGATCTTTACCTTCATGGATATTTCAGTGCTTCGATTAAGTTTCTTGCTGATTACACTGTTGGAGTTGTGGAAACATTAGAGGCAAAGCCTGAGGATGCAGTTGTTAATGTGCCATGTTATGGTGGGGTTGCTATAAGACCTCCATTTTATGGTCCACCCCCAGGGTCCATGGTTGGTCCAAGCTACCCAGGTCCTGCACCCAATGAGCTTCGTGTTGCCCTAAGGAGCATCATGTTCTGTCAAATGAGGCTCCTCTTAACCCCAATGCTAACCATGAAAAGAGGACCCAATCCAACTTCACTTACACCTCATCATCTGAAATTAGAAGATGTGTTTTCAAAAGATTTAGAATTATGTGCAGTGGAAGATGAAAAGTTTGTTGAACAATCTGTAGCAAATACAGAAGCTTTAGAACCATTCATTGGCATGCAGTTCAGTTCAAGGGAGGAAGCCAGAGAATTCTACATTGCCTATGGTTATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGCTTTCGCGCAAAAAAAAGTATGTACACAGAAAAGATAGAGTGCTCCCTCCTCCACCAGCCACCCGAGAAGGTTATCAGGCCATGATAAGGTTGGCTTTACGGGATGGAGGGAAGTGGATTGTAACCAAATTTGTGAAGGAGCATACTCATGAGCTGTTGAGTCCCAGTAAAGTTGCATGGCGAGGGTCTGGGAAGCACTTGGTTAGTGAGGATGAGAAAGATAAGAGAATCTGTGAGCCATCACTTGAGTTGTACAATGAAAGACAAAAGTGCAAACGACTTTGTGCTGCATATGAAGAACAGTTAAACAACATACACGGAGTATGTTATTTCCACGGAAGTTGCCAACTTCACGTCCATTACCCTGACAACATGGGGATCGCGAGAGAGCAAAAAATGGAAAACTCAGGAAGAGTAGGGGAGGGACGTCTTCTTCGTTTACATGGAGATGAGTCTTCTTGA 1161 0.4324 MGLLLFCSLLFVLASASSRNLPIIAFDEGYTHLFGENNLVVHKDGRLVHLSLDERTGSGFVSHDLYLHGYFSASIKFLADYTVGVVETLEAKPEDAVVNVPCYGGVAIRPPFYGPPPGSMVGPSYPGPAPNELRVALRSIMFCQMRLLLTPMLTMKRGPNPTSLTPHHLKLEDVFSKDLELCAVEDEKFVEQSVANTEALEPFIGMQFSSREEAREFYIAYGYWSRFCLLKRRLSRKKKYVHRKDRVLPPPPATREGYQAMIRLALRDGGKWIVTKFVKEHTHELLSPSKVAWRGSGKHLVSEDEKDKRICEPSLELYNERQKCKRLCAAYEEQLNNIHGVCYFHGSCQLHVHYPDNMGIAREQKMENSGRVGEGRLLRLHGDESS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01062 386 Gene3D - 12 96 - -
Rops8g01062 386 Pfam FAR1 DNA-binding domain 248 286 IPR004330 -
Rops8g01062 386 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 185 339 - -
Rops8g01062 386 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 86 IPR013320 -
Rops8g01062 386 Pfam Glycosyl hydrolases family 16 29 88 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01062 Rops-Chr8 22634051 22635870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01062 3 86 Glycoside Hydrolase AT1G14720 62.353 5.19e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops8g01062 FAR1 1.6e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01062 - - adu:107461491 252.677