Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01053 ATGGAAGCAACAGACATGAAAATACAAGCATCATCTTCTCCCTCTCCTTCAAGGTCATGGAGATACCATGTGTTTTTGAGTTTCAGGGGAGAAGACACTCGGAAACGCTTTACTGATCATCTGCTTGCTGCATTGGAAAGAAAAGGAATCACAACATTCATGGATGAAAAAGACATTGAGAAAGGAGGACACATTTCAACAGAGCTCCTCAATGCCATAGAGGAATCTATGTTTGCTATCGTCATTCTCTCACCAAACTATGCTTCATCCACTTGGTGTTTGAACGAGCTCCAAAAGATTGTTGAGTGCAAAAACAGCCTCGGTCTAACAGTTATGCCGGTATTCTATGACGTTGACCCCACTGATGTGAGGCATCAAAAAGGAAGCTTTACGGAAGCCTTCAGAAAACATGAAGAGAATTTCCACCGAGACAAGGTTGAAAGATGGAGAGATGCTTTAAGACAAGCATCAACTTATTGTGGATGGGACTCCAAGGATCGGTATGAGGCAAAACTCGTGGAAATAATTGCTCAAGACATACATAAAAGGCTGACTCTTAAATTACCATCTTGGACAGAGAACCTTGTTGGGATTGCTACAAGGGTGGAGGAAGTGAACAAGCTCATAGGTATGGGGTTGAATGACGTTCGCTTTATAGGCATATGGGGCATAGGTAAGACAACTATTGCTAGAGCTGTCTATGAAGCAATAAAAGGTAATTTTGAAGTTACATGCTTTCTTGAGAACGTTGGAGAACTATGTGAGACAAAAGGTTTAGTTCACGTGCAAAAAAAACTTCTTTCTCATCTTAATATAAGTTGGAGTGATTTTTCTAATTTGCATGATGGGAGAAAGACAATACAAAACTCTTTGTGCAGCAGGAAGGTTCTTGTCGTTCTTGATGATGTAAATGAAGTTAGCCAATTGGAGAATTTGGCTGGGAAGAAATATTGGTTTGGTCCTGGAAGTAGAGTTATAGTCACAACAAGAGATATACACCTGCTGAAGATACATGGAGTGCATGGAATTTATGAGGTTGGAGGCTCAGTCCAAAATGAAGAAGAGTATTTGGATTTGTCTAAAGACGTGGTCAAATATAGTGGCAGTCATACATTGGCACTTGAGTTCTTGATCTTCTTCATCCAGTCTGCCTTGGTCTTCATGATCCATTCGTTGATACAGTTTGGCGAGCTACCGAGCAACAATCCAAACCTCTATTTGAATAATTTTCTAGAGATCTATGATACTATTAAATATAACGGAGTCTCAGATGATGCCATCAGACTATTCTCTTCATGGGACAAGACGAATCAATGGTCAACTTCTTTGTTTCCTGGATTCACCTCCACTTGGGCTCAATTCTCACATAAATTTGTTAAGTTTAGAAATGACATATTTGCACTAGTGATCAAAGAAAAAAACTTTGTTGGTAATCCCAAAAGAGAGAGATATGATCCACATTCAAGTACCTACAATTATAGCTGGAGGGACCGTTCAAATCACTCTTGGGGTAATCTGGAAAAAACTTACCAATCTCCACAACAGCATGCTCCAAGTCACAAAGCACCTGCCATTATGCCATACATTGATAAAAATAAAACTAGACTTCAAAGCCATGAAGTAACCATGAAAAGTTTGAAGACTCAAATTAGACAACTTGGTGAGGAGCTAGTGGCTTGCTCTTTGATGCCAGATACCTTCAAATCGAGGGATGTTGGGTGCTTTCCACAACAAAAATGTTTATTTTTTTGTAAAATAGGAATGAACACTCAAAGTGAACAACAGATGCACTACAAGAAAACAGGATTCGATGAGGGAGATGATGCAGCTAGGACCTGGCATGGCTCCACCCACGCAATAGCACCAGCCACGACCCTATCTCAGGATGCCGCCGCCGGCCAGCACTGGAATTTATCAACATCCGCTTTGATGGAGAGAATTCCAAGTAAATACCTGTATGATCTATGGTTTGAAAAATGTAGCTGCATACTACTTTGGCCTAGAAATCAATACAGCGTGACTAAAGAGGAAGCTGAGGAGGGTCTCAGACAAGTGTTAGCTTTTTGGAAGCCTGTCCTTTTAGCAAACAAAAATCTTCTTGACTATGTCTTCTTGCAAAGTTTGGAATTTGCTCAATCCCGTGACTTGTCAATGCAGATACACACAGGGTAA 2172 0.4047 MEATDMKIQASSSPSPSRSWRYHVFLSFRGEDTRKRFTDHLLAALERKGITTFMDEKDIEKGGHISTELLNAIEESMFAIVILSPNYASSTWCLNELQKIVECKNSLGLTVMPVFYDVDPTDVRHQKGSFTEAFRKHEENFHRDKVERWRDALRQASTYCGWDSKDRYEAKLVEIIAQDIHKRLTLKLPSWTENLVGIATRVEEVNKLIGMGLNDVRFIGIWGIGKTTIARAVYEAIKGNFEVTCFLENVGELCETKGLVHVQKKLLSHLNISWSDFSNLHDGRKTIQNSLCSRKVLVVLDDVNEVSQLENLAGKKYWFGPGSRVIVTTRDIHLLKIHGVHGIYEVGGSVQNEEEYLDLSKDVVKYSGSHTLALEFLIFFIQSALVFMIHSLIQFGELPSNNPNLYLNNFLEIYDTIKYNGVSDDAIRLFSSWDKTNQWSTSLFPGFTSTWAQFSHKFVKFRNDIFALVIKEKNFVGNPKRERYDPHSSTYNYSWRDRSNHSWGNLEKTYQSPQQHAPSHKAPAIMPYIDKNKTRLQSHEVTMKSLKTQIRQLGEELVACSLMPDTFKSRDVGCFPQQKCLFFCKIGMNTQSEQQMHYKKTGFDEGDDAARTWHGSTHAIAPATTLSQDAAAGQHWNLSTSALMERIPSKYLYDLWFEKCSCILLWPRNQYSVTKEEAEEGLRQVLAFWKPVLLANKNLLDYVFLQSLEFAQSRDLSMQIHTG* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01053 723 Pfam NB-ARC domain 214 359 IPR002182 GO:0043531
Rops8g01053 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 383 IPR027417 -
Rops8g01053 723 Coils Coil 536 556 - -
Rops8g01053 723 Gene3D - 18 184 IPR035897 -
Rops8g01053 723 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 186 - -
Rops8g01053 723 Gene3D - 185 341 IPR027417 -
Rops8g01053 723 ProSiteProfiles TIR domain profile. 20 184 IPR000157 GO:0007165
Rops8g01053 723 Pfam TIR domain 22 192 IPR000157 GO:0007165
Rops8g01053 723 PRINTS Disease resistance protein signature 290 304 - -
Rops8g01053 723 PRINTS Disease resistance protein signature 215 230 - -
Rops8g01053 723 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 162 IPR035897 -
Rops8g01053 723 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 380 IPR044974 GO:0006952
Rops8g01053 723 SMART till_3 21 159 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01053 Rops-Chr8 22449813 22457451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01053 8 377 WRKY Transcription Factor Family AT4G12020 27.621 5.70e-35 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01053 - - aprc:113861574 465.692