Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01046 ATGGAAATGGAAGGAGAGAGAGATGAGGAAGGGTACGAGTCAGGCGAGTCAACACGTTCCAATGAGGAACCCGACTCGGTGGATGAGATCCAACGAGTCATTGAATCGGTGGTTCAATTGGGTGAGTACCGAAGGACACAGAGGAAGGAAAGCCACAACCTGGCACGTCGTTTCAAGCTCATGTTGCCTCTCATGGAAGACCTTAGGGAACTGCACCACCCCATTCCAGAAAACGGTGTCGTTTGGTTGAGGAACCTCAGGGATGCGCTTTTGAGTGCCAAGGATTTGTTAACATTGTGTAGCCAAGGAAGCAAGATTCACCTCGCATTGGAGAGCGAGGCGGTTATGATCAGATTTCAGAGAGTGTGTGACAAATTAAGCCAAGCATTTGGTGGCGTGCCTTGTGATGAATTGGGGATCTCTGATGAAGTCAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAAGAGGGCAAGGAGAAGGACTGATACACAGGATATAGAACTTGCAATGGATATGATGGTGGTATTTTCTGATCAGGATGATCGTAATGCTGATAGTGCTATTATTGAAAGGTTGGCAAAAAAGCTTGAGCTTCATAGTGTTGAGGATCTTGAGGTAGAAACATTGGCTGTTAAGAACCTTGTTACAGAAAGAAAAGGGCAACAAGCTGACAGTACCCAGAGAATAATTGATCTTCTTAACAAATTCAAACGAGTTGCAGGCATGGAAGAAACCAGTGTCATTGATGATCCTGTCATCCCAAAGATGCTTCATAGGTCCACTTCTTTGATCATCCCTCATGAGTTTCTCTGCCCAATCACACTAGAAATCATGACTGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATTGAGAAGTGGTTCAAATCCAATCATAACACCTGCCCAAAAACTAGGCAACCTCTGGCTCACCTCTCATTGGCACCAAATTGTGCCTTGAAGAACTTGATTATGGAATGGTGTGAGAACAAAAACTTTAAACTTCCTAAAAAATATACTACTTCAAGTCAAGAAAGCTGTCCCATTGAGATCAAAGAGGAAATTCCATCTTTAGTTGACAGCCTATCCTCTATTCATTTAGAAGAGCAGAGAAAGGCAGTGAAGAAGATACGTATGTTATCAAAGGAAAATCCTGAGAACAGGGTTTCAGTTGCTGAGCATGGAGGAATACCACCATTAGTGCAACTATTGTCCTATCCAGATTCAAGAATACAGGAGCATGCTGTTACAGCAATTTTAAATTTATCAATTGATGAGAGTAACAAGAAACTTATATCTAAAGAAGGGGCTATTCCAGCTATTATAGAAGTGCTTGAGAATGGGAGTGTTGTGGCTAAAGAAAACTCAGCAGCAGCTTTATTTAGCTTGTCAATGCTTGATGAGATTAAAGAGATGATTGGTCTATCAAATGGGATTCCCCCTTTGGTAGATCTATTGCAGAATGGGACAGTTAGAGGGAAGAAAGATGCTGCTACAGCTCTTTTTACCTTATCTCTCAATCATGCAAACAAAGGTAGGGCTATTGAAGCTGGCATTGTAACACCTTTACTTGAATTGCTCAAGGACATGAACTTGGGCATGATTGATGAAGCCCTCTCCATTCTATTACTTCTTGTATCAAATTCAGAAGGAAGACAAGAGATTGGACAGCTCTCATTCATTGAAACTCTTGTTGAGTTCATGAGAGAAGGGACTCCCAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGTGTTCAAATAATTCATCTTTTATACTGGCAGCTCTTCAGTTTGGAGTGTATGAGCATTTAATTGAGATTAAGCAAAGTGGAACAAACAGAGCACAGAGGAAAGCAAATACAATCTTAGAGCTCATAAGCAAGAATGAGCAAATTTAA 1920 0.4151 MEMEGERDEEGYESGESTRSNEEPDSVDEIQRVIESVVQLGEYRRTQRKESHNLARRFKLMLPLMEDLRELHHPIPENGVVWLRNLRDALLSAKDLLTLCSQGSKIHLALESEAVMIRFQRVCDKLSQAFGGVPCDELGISDEVKEQLELMHVQLKRARRRTDTQDIELAMDMMVVFSDQDDRNADSAIIERLAKKLELHSVEDLEVETLAVKNLVTERKGQQADSTQRIIDLLNKFKRVAGMEETSVIDDPVIPKMLHRSTSLIIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFKSNHNTCPKTRQPLAHLSLAPNCALKNLIMEWCENKNFKLPKKYTTSSQESCPIEIKEEIPSLVDSLSSIHLEEQRKAVKKIRMLSKENPENRVSVAEHGGIPPLVQLLSYPDSRIQEHAVTAILNLSIDESNKKLISKEGAIPAIIEVLENGSVVAKENSAAALFSLSMLDEIKEMIGLSNGIPPLVDLLQNGTVRGKKDAATALFTLSLNHANKGRAIEAGIVTPLLELLKDMNLGMIDEALSILLLLVSNSEGRQEIGQLSFIETLVEFMREGTPKNKECAASVLLELCSNNSSFILAALQFGVYEHLIEIKQSGTNRAQRKANTILELISKNEQI* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01046 639 Gene3D - 23 134 IPR036537 GO:0007166
Rops8g01046 639 Pfam Armadillo/beta-catenin-like repeat 389 428 IPR000225 GO:0005515
Rops8g01046 639 Gene3D - 476 638 IPR011989 -
Rops8g01046 639 Coils Coil 141 161 - -
Rops8g01046 639 PANTHER U BOX DOMAIN-CONTAINING 48 634 - -
Rops8g01046 639 SUPERFAMILY RING/U-box 266 340 - -
Rops8g01046 639 SUPERFAMILY ARM repeat 359 637 IPR016024 -
Rops8g01046 639 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 400 442 IPR000225 GO:0005515
Rops8g01046 639 FunFam RING-type E3 ubiquitin transferase 23 136 - -
Rops8g01046 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 340 IPR013083 -
Rops8g01046 639 CDD RING-Ubox_PUB 267 319 IPR045210 -
Rops8g01046 639 SMART Ubox_2 269 332 IPR003613 GO:0004842|GO:0016567
Rops8g01046 639 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 482 524 IPR000225 GO:0005515
Rops8g01046 639 FunFam RING-type E3 ubiquitin transferase 264 339 - -
Rops8g01046 639 FunFam RING-type E3 ubiquitin transferase 344 639 - -
Rops8g01046 639 SMART arm_5 512 552 IPR000225 GO:0005515
Rops8g01046 639 SMART arm_5 389 429 IPR000225 GO:0005515
Rops8g01046 639 SMART arm_5 471 511 IPR000225 GO:0005515
Rops8g01046 639 SMART arm_5 430 470 IPR000225 GO:0005515
Rops8g01046 639 SMART arm_5 553 593 IPR000225 GO:0005515
Rops8g01046 639 Pfam U-box domain 266 336 IPR003613 GO:0004842|GO:0016567
Rops8g01046 639 MobiDBLite consensus disorder prediction 1 28 - -
Rops8g01046 639 ProSiteProfiles U-box domain profile. 265 339 IPR003613 GO:0004842|GO:0016567
Rops8g01046 639 MobiDBLite consensus disorder prediction 12 28 - -
Rops8g01046 639 Gene3D - 353 475 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01046 Rops-Chr8 22379454 22382719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01046 27 639 U-box Gene Family AT5G42340 64.927 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01046 - - gmx:100777362 1033.09