Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01036 ATGGCCACCACTCATCCTCTTCTACACTCATCTGGGTCCTCTTTTCTTTCTCAATTTCGTTCCTTTCCACCTCAATTCTCTTCTTCTTCACTGTTCCCTCATGGAAAGAAGAATGGTAGTGCAGTGGTGACTGTAAAGGCCACTGCTGCTGAGGTTGTGTTGGTGGAGAAGTCTGAGGCAGAGAAGACCAGTAGGCTCAAAACAACTTACAATGAGAAAATTGTTCCCTTGCTCATGAAAGAGTTCTCTTACACCAACATACACCAGGTGCCTAAAATTGAGAAGATTGTGGTTAACTGCGGTATTGGAGATGCTGCACAAAATGCGAAAGGTTTGGAAGCAGCAATGAATGATCTAGCACAAATCACAGGGCAGAGACCTGTTAAGACTAGGGCCAGGGCTTCCATTGCTACCTTCAAGATCAGGGAAGATCAACCACTTGGGATTGCTGTGACACTCAGAGGAAATATGATGTACTCATTCCTAGACAGAGTTGTCAACTTGGGACTTCCTAGGACAAGAGATTTCCAAGGTTTGAACCCCAACAGCTTTGATGGGTTTGGAAATTACAACATTGGCGTTAAGGACCAAGGTGTGTTCCCTGAGATCAGAGCTGATGTTGTTGCTAAGCCTAGGGGAATGGATATTTGCATCTCAACAACAGCTAAAACTGATCAAGAAGCACAAAGATTATTGGCTCTTATGGGCATGCCATTCAGAGAGGGAGCTGGTCCTGCCACCACAGCTCGCAAAAAGAAGCTCAAGTCTCATCATTTTGATTCAAAATCAAAGGGAAGAGCAAGGAAGTAA 810 0.4457 MATTHPLLHSSGSSFLSQFRSFPPQFSSSSLFPHGKKNGSAVVTVKATAAEVVLVEKSEAEKTSRLKTTYNEKIVPLLMKEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLAQITGQRPVKTRARASIATFKIREDQPLGIAVTLRGNMMYSFLDRVVNLGLPRTRDFQGLNPNSFDGFGNYNIGVKDQGVFPEIRADVVAKPRGMDICISTTAKTDQEAQRLLALMGMPFREGAGPATTARKKKLKSHHFDSKSKGRARK* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01036 269 ProSitePatterns Ribosomal protein L5 signature. 119 135 IPR020929 GO:0003735|GO:0005840|GO:0006412
Rops8g01036 269 MobiDBLite consensus disorder prediction 250 269 - -
Rops8g01036 269 Pfam ribosomal L5P family C-terminus 146 239 IPR031309 -
Rops8g01036 269 SUPERFAMILY RL5-like 65 240 IPR022803 -
Rops8g01036 269 Hamap 50S ribosomal protein L5 [rplE]. 63 241 IPR020930 GO:0003735|GO:0005840|GO:0006412
Rops8g01036 269 FunFam 50S ribosomal protein L5 61 241 - -
Rops8g01036 269 Pfam Ribosomal protein L5 86 142 IPR031310 -
Rops8g01036 269 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 67 248 IPR002132 GO:0003735|GO:0005840|GO:0006412
Rops8g01036 269 MobiDBLite consensus disorder prediction 242 269 - -
Rops8g01036 269 Gene3D - 57 241 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01036 Rops-Chr8 22000024 22002488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01036 92 218 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 27.559 9.31e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01036 K02931 - gmx:100818896 417.542