Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01034 ATGGTGTCTCTTAACCCAAACCCACCTCAACCTTTTCACTTCTTTGAACCAATCATCAACATGGAGGATCCGAATAAGAAGATCCGAAAACCTTATACCATTACCAAGTCAAGGGAGAGTTGGACAGAACAGGAGCATGACAAGTTTCTTGAAGCTCTTCAGCTATTTGACCGTGACTGGAAGAAGATTGAAGCATTTGTAGGTTCAAAAACAGTTATCCAGATAAGGAGTCATGCACAAAAGTATTTTCTGAAAGTTCAGAAGAATGGCACAAGTGAACATGTACCTCCCCCTAGGCCAAAGAGAAAAGCTGCTCACCCATACCCACAAAAAGCTCCTAAAAATGCTCCTACTGTGTCCCAAGTTCCAGGGCAAATGCAATCTTCATCTGCTTTCACTGAACCATCATACATTTATAGGCCAGACTCATCATCCGTGCTTAGAACTCCAATTAGCAGTGTGCCTTTGTCATCTTGGAGTTATAACGTTATGCCACCAGTCAGTCTACCACAAGTGGCTAAAGGGTTAGATGATAGGGGATTGATTCAACAAACCATTCCTCTCAATTGCTGCTATAGCAGTAGTACTGAAAGCACTCCAAGGGCCTGGCCAGGTAGCAAACAGACAGATCAAGATGACCAAGGCAAGCCAATTAAAGTAATGCCAGATTTTGCCCAAGTCTACAGCTTCATTGGCAGTGTATTTGATCCAAATGCAACTAATCATCTACTGAAGCTGAAACAGATGAACCCAATAAATGTGGAAACCGCATTGCTATTGATGAGAAACCTCTACATCAATTTAATGAGTCCTGAATTTGAGGATCATAGGAGATTGCTGTCATCTTATGATGCTGACTTGGAGAAGTCAAAGCCTGGTGGTAGTCATTGCAACAAATCCCTCACTGATAAATCAGAGAGTGCTGTTCTATCTGCTTAG 939 0.4217 MVSLNPNPPQPFHFFEPIINMEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAPTVSQVPGQMQSSSAFTEPSYIYRPDSSSVLRTPISSVPLSSWSYNVMPPVSLPQVAKGLDDRGLIQQTIPLNCCYSSSTESTPRAWPGSKQTDQDDQGKPIKVMPDFAQVYSFIGSVFDPNATNHLLKLKQMNPINVETALLLMRNLYINLMSPEFEDHRRLLSSYDADLEKSKPGGSHCNKSLTDKSESAVLSA* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01034 312 Gene3D - 41 88 - -
Rops8g01034 312 ProSiteProfiles SANT domain profile. 36 89 IPR017884 -
Rops8g01034 312 FunFam protein REVEILLE 6 isoform X1 40 88 - -
Rops8g01034 312 MobiDBLite consensus disorder prediction 295 312 - -
Rops8g01034 312 MobiDBLite consensus disorder prediction 193 211 - -
Rops8g01034 312 SMART sant 37 85 IPR001005 -
Rops8g01034 312 MobiDBLite consensus disorder prediction 87 126 - -
Rops8g01034 312 NCBIfam myb-like DNA-binding domain, SHAQKYF class 36 85 IPR006447 GO:0003677
Rops8g01034 312 CDD SANT 40 83 IPR001005 -
Rops8g01034 312 ProSiteProfiles Myb-like domain profile. 33 83 IPR001005 -
Rops8g01034 312 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Rops8g01034 312 MobiDBLite consensus disorder prediction 287 312 - -
Rops8g01034 312 MobiDBLite consensus disorder prediction 193 215 - -
Rops8g01034 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 87 IPR017930 -
Rops8g01034 312 PANTHER SWI/SNF COMPLEX-RELATED 21 269 - -
Rops8g01034 312 Pfam Myb-like DNA-binding domain 38 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01034 Rops-Chr8 21956557 21961241 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops8g01034 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01034 - - gmx:778090 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01034 8 21956557 21961241 Rops8g01034 8 21956557 21961241 ECH
Rops4g01539 4 38400162 38410574 Rops8g01034 8 21956557 21961241 ECH
Rops8g01034 8 21956557 21961241 Rops4g01539 4 38400162 38410574 PCT