Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01021 ATGGAGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGTTCCACTGTTTCCTCCACCACTGCCACTGCCAGTGCTAGTGCTAGTGCATCTTCTGTGTCTTCTTCTTCGTCCTCTGGTTTTGGCACTTGTTACTTGCAGCCTGAAGCTTCATCTGGGTTCTCTATTTTTGATGGAGAACAAGCAAGTCGAAGTTTGTCCCTTTCTGCATACCCATTTGAAGCAAGAGGCTCCATTGAAGAGTTGCATGAGCTTTACAAGCCTTTCTTCCCCAAATCACAGCCTCTCTCATTGCAAACTTCTCCTTTGTCCTCATTCTCTTATTCCTCTCCCAAATCTGCTCAAACACAAGAGAAACAACAGCAAAGGAGTAAGCAGCCACACTCTGCTGGTTCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAGATGAAGAAAGTTTGTCAAGTGCCAGTTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATAAAAGGGTCACCATATCCAAGGGGTTACTACAGATGTAGCAGTTCAAAAGGATGCTTAGCAAGGAAACAAGTTGAGAGGAACAGATCAGACCCATCAATGTTCATAGTCACATATACAGCTGAACACAATCACCCAGCACCTACTCATAGAAACTCTCTTGCTGGATCCACACGCCAAAAGCCATTGACACCTCAAATTGCCACCAATGGAGACTCTGATAAGGTTTTGACAAAACCCACTTCCCCTGCAACCTCAGGGGCAGAGGAAGAGGTGCCAACTCAGGGAGAAAAGTCAGAGAGCAGAGAAGAAAAAGATGTGGTGGATGATGAGGAAGAAGATGAATTTGGGTTATCTGATATGGTGCTAACTGATGATTTCTTTGAGAGTTTAGATGAACTGAGTCAACTCACTGGCTCTTCTGTAGTCACTGGAGATTGCTTCACTGATCCCTTTTCTGCTATTGCAATTCCTACTTGGGTGGCCAATAGTGCTGCCACTACTGCTGGTGGTGGCTGA 1029 0.4568 MEEDWDLHAVVRGCSTVSSTTATASASASASSVSSSSSSGFGTCYLQPEASSGFSIFDGEQASRSLSLSAYPFEARGSIEELHELYKPFFPKSQPLSLQTSPLSSFSYSSPKSAQTQEKQQQRSKQPHSAGSVTTPRSKRRKNQMKKVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPSMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLTPQIATNGDSDKVLTKPTSPATSGAEEEVPTQGEKSESREEKDVVDDEEEDEFGLSDMVLTDDFFESLDELSQLTGSSVVTGDCFTDPFSAIAIPTWVANSAATTAGGG* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01021 342 MobiDBLite consensus disorder prediction 101 138 - -
Rops8g01021 342 FunFam WRKY transcription factor 22 141 211 - -
Rops8g01021 342 MobiDBLite consensus disorder prediction 101 147 - -
Rops8g01021 342 Gene3D WRKY domain 141 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g01021 342 MobiDBLite consensus disorder prediction 215 259 - -
Rops8g01021 342 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 307 IPR044810 GO:0003700
Rops8g01021 342 Pfam WRKY DNA -binding domain 159 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g01021 342 MobiDBLite consensus disorder prediction 214 289 - -
Rops8g01021 342 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g01021 342 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g01021 342 SUPERFAMILY WRKY DNA-binding domain 155 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01021 Rops-Chr8 21503416 21505023 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01021 1 341 WRKY Transcription Factor Family AT4G01250 47.578 2.76e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops8g01021 WRKY 2.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01021 K13425 - gmx:100798084 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01021 8 21503416 21505023 Rops5g01056 5 21546642 21548379 ECH
Rops8g01021 8 21503416 21505023 Rops6g02676 6 48144927 48146228 ECH
Rops8g01021 8 21503416 21505023 Rops8g01021 8 21503416 21505023 ECH
Rops4g01545 4 38553180 38554666 Rops8g01021 8 21503416 21505023 ECH
Rops4g02108 4 47511521 47516886 Rops8g01021 8 21503416 21505023 ECH
Rops8g01021 8 21503416 21505023 Rops4g01545 4 38553180 38554666 PCT