Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01018 ATGGGAGACCCAATGGAAAGCCAAGACCCACCACCACCCCTATTAATGCTGCCACCCCAAGACAACACTACTCTTCCACCCTTCATCTTCACTCCTTCTTCTATGCTGCAAAACCCTTTGGACCCTCAAGATCAAGGCCTTGCTGACATTGATTGGGGTAACCTTTTCGGTGGCCAAAACAACTTGCTTGTTGGGGATGCCAAGGAAACAATGGATCCATGTGCTTCATCATCTTTCTTGAATCCTGAGGAGGAAAAGGGGAACAAGGAGAAAAGGATTAAAGGTGGGAGAGTGAAGAAGACAACACGAGTGCCAAGGTTTGCATTTCAAACCAGAAGTGTTGATGATATTTTGGATGATGGTTATCGTTGGAGGAAATATGGGCAGAAAGCTGTGAAGAATAGCAAATATCCCAGAAGCTACTACCGCTGCACGCATCACACATGCAATGTGAAGAAACAAGTGCAAAGGCTATCCAAAGATACAAGCATTGTGGTGACGACTTATGAGGGAATTCACAACCATCCATGCGAGAAGCTGATGGAAACTTTAACGCCTCTTCTGAAGCAAATACAGTTTCTTGCTAGCTTGTAA 594 0.4495 MGDPMESQDPPPPLLMLPPQDNTTLPPFIFTPSSMLQNPLDPQDQGLADIDWGNLFGGQNNLLVGDAKETMDPCASSSFLNPEEEKGNKEKRIKGGRVKKTTRVPRFAFQTRSVDDILDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLASL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01018 197 Coils Coil 194 197 - -
Rops8g01018 197 SMART WRKY_cls 118 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g01018 197 Pfam WRKY DNA -binding domain 119 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g01018 197 FunFam WRKY transcription factor 57 104 178 - -
Rops8g01018 197 SUPERFAMILY WRKY DNA-binding domain 112 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g01018 197 Gene3D WRKY domain 103 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g01018 197 ProSiteProfiles WRKY domain profile. 113 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g01018 197 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 78 179 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01018 Rops-Chr8 21417093 21420728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01018 80 197 WRKY Transcription Factor Family AT5G41570 69.748 7.26e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops8g01018 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01018 - - gmx:100796481 296.204