Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01013 ATGTCCTACTTTGTCAACCTTGGTTTTGGCTACTCCATAGCCATAGCCCTCGCTTTCCTTGTTCTTCTCTCAACCCTTATCCTCTCTTCTTACCTTTGTTGCCGCGCAAATCGCAACCGCCGCAACAACACTAACCCCACCACCAACCAAGACGGTGTTGTTTTGCCACGTGTCATCTTTGTGGCTGAGGATGATCATGGTGAGGAAAACACCGCCGTTGGTTTGGACCAGAACGTGATAAACTCGTATCCGAGGTTTCAGTTCAGCAAGGATAACGGCTCCGCCATGGGACAAAACACCACGTGTTCCATATGTTTGTGTGAGTACAAGGATTCGGAGATGTTGAGGATGATGCCGGAGTGTCGACATTATTTTCACCTTTGTTGTCTTGATTCGTGGTTGAAGCTTAATGGGTCTTGCCCAGTTTGTCGGAACTCGCCGCTTCCTACGCCGCTTTCCACGCCGTTGCAAGAGGTGGTGCCGCTTTCTCAGTATGCAGCTGATAGGAGAAGAACGAGGTGA 522 0.4981 MSYFVNLGFGYSIAIALAFLVLLSTLILSSYLCCRANRNRRNNTNPTTNQDGVVLPRVIFVAEDDHGEENTAVGLDQNVINSYPRFQFSKDNGSAMGQNTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRTR* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01013 173 SUPERFAMILY RING/U-box 101 149 - -
Rops8g01013 173 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Rops8g01013 173 SMART ring_2 102 143 IPR001841 -
Rops8g01013 173 Pfam Ring finger domain 101 144 IPR001841 -
Rops8g01013 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 148 IPR013083 -
Rops8g01013 173 PANTHER RING-H2 FINGER PROTEIN ATL67 2 171 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01013 Rops-Chr8 21332097 21332934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01013 6 163 C3H Transcription Factor Family AT5G07040 41.772 6.07e-38 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01013 - - lja:Lj1g3v2807930.1 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g01013 8 21332097 21332934 Rops8g01013 8 21332097 21332934 ECH