Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01012 ATGACCACCATCGAGGAACTAGACACATTCACCAAGTTATTCCTCTTAATCATCTTCATCGTTCTCTTCGTAAGAGTATGTTATGTCTACTTTTCCACCTACCGTCGTAGATCAAACCAACAACATGGTCATGATAAAATCACCACCACGGGGCTCCCCATTGATGTTATAAACTCTTACCACACTTTCCCTTATGCCAAAGACAACATTGCCACAAACTCTAGCGATCATGAAACAACATGTTCCATATGTATTTCAGATTATGAGGAATCGGAGATGTTGAGGATGATGCCACATTGTCGCCACTACTTTCATCGAGATTGTGTTGATAAGTGGTTGAAGGTTAATGGGTCGTGTCCCATTTGTAGGGATTCTCTATTGCAAGCTAGTAATGGAGGATCATCATCTACCTTAGAATGCGTCTAA 426 0.4108 MTTIEELDTFTKLFLLIIFIVLFVRVCYVYFSTYRRRSNQQHGHDKITTTGLPIDVINSYHTFPYAKDNIATNSSDHETTCSICISDYEESEMLRMMPHCRHYFHRDCVDKWLKVNGSCPICRDSLLQASNGGSSSTLECV* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01012 141 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
Rops8g01012 141 PANTHER RING-H2 FINGER PROTEIN ATL67 44 130 IPR044289 GO:0016567|GO:0016740
Rops8g01012 141 SUPERFAMILY RING/U-box 67 128 - -
Rops8g01012 141 SMART ring_2 81 122 IPR001841 -
Rops8g01012 141 Pfam Ring finger domain 80 123 IPR001841 -
Rops8g01012 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 128 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01012 Rops-Chr8 21300040 21300465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01012 51 129 C3H Transcription Factor Family AT5G06490 37.805 2.15e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01012 - - ccaj:109814695 172.17