LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g01008	ATGCTCATGGAGCTTCCTTCCTTTTACATTCTCTCCACAATCCTGCTCCAATGTATGCTTCCTCAGTCACTCAATTGCCAACAAGTATACCTCAATGGCACTGTTTATGACTGCTCTGACAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGCATTCAAAAGTCATGCACTTCCTTCTTAGTTTTCAGGTCAAAACCTCCCCATGATAACCCTGAAAGCATTGCATACCTTCTTGGCTCTGAAGCATCTACTATTGCCTCAATCAACAAGATCTCAAGAAATGACAAGATTCCTTCAAATAAATCAATCATTGTTCCAATTTTCTGTTCATGTTCTGGAAATATCTACCAGCATAGCACACCTTACACTGTCAGCAAGAATGATACCTACTTTGAGTTGGTAAGAGAAACTTACCAAGGCCTCACCACCTGCCAGGCATTGATGGGTCAGAATTACTATGCTTCTGTCAATATTGCAGTTGGTGCACAGCTCACAGTTCCAATGTTATGTGCTTGTCCTACTGCAAACCTTAGAGCAAGAGGGGTAACCTCTTTGCTGGTTTACATGGTGAACTATGGTGACACGGTTAAGTCCATAGGAGAGGCTTATGGTGTTGATGAACAAAGTATGCGAGAGGCTAATGAGTTGCCAATGCCACCAAGAGCAAATAGCAGCGTGATGCTCTCTGCCTTGACACCTATATTAGTTCCTCTGAGAGGCAAGAACTGCAAAGAGAACCCAGATAAATTTTATTGTAAATGTTTCCAGGAACTGCATGCAGATGGAGGCTCCAAGGAGCTCTTCTGTGATGAATCTCATGGTGAAAAATTCCCTTCCAAATTGGTTGCTGCATTAGGTGTTGGCATTGGTGCAGGCTTTCTGTGTCTGTTTCTCTTGGGTTACAAGTTATATCAATACATACAGAAGAAGAGAGAGAGTATTCGCAAGGAAAAGCGGTTCAGGCAAAATGGTGGCTACTTGTTACAAGAGAAGTTCTCTTCTTATGGAAATGGAGAAAAGGCAAAGCTTTTTACGGCAGAGGAGCTGCAAAGAGCAACAGATAACTACAACCGGAGTAGGTTCCTTGGTCAGGGTGGCTATGGCATTGTGTATAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAGAAGTCAAAAGAGATCGAAAGGAACCAGATAGAGACTTTTGTGAATGAAGTGGTCATTTTATCCCAGATCAACCACAGGAACATTGTCAAACTCTTGGGTTGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATTTATTCCCAATGGAACTCTTTCCCAGCATATCCATAGGCAAGACCATGAGTTGTCCCTTCCATGGGACAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGGGCAGTGGCATATATGCATTTTTCTGCTTCTGTTCCCATCTTTCACAGAGACATCAAACCCACCAACATACTCCTAGACAGTAACTACAGTGCCAAAGTGTCTGATTTTGGAACAGCAAGATCAGTTCCACAAGATAAGACTCACTTAACCACAGTTGTAGGAGGAACTTTTGGGTACATAGACCCTGAATATTTCCAGTCCAGTCAATTTACAGATAGGAGTGATGTATATAGTTTTGGGGTTGTGCTTGTAGAGCTTATAACTGGGAGAAAGCCCATTTCATTCTTAGAGGAAGATGAGGGTCAGAATCTGATTGCAGAATTCATTTCTTTGATGAAGGAGAACCAACTTTCTCAATTTTTAGATGCAAGAGTGGTCAAGGAAGCAAGGATAGATGACATTCTTGCCATTGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGACCAACCATGAAAGAGGTTTCAGCAGAACTAGAAGCATTGAGAAAGGTACAAAGTTCCTTACAAATCAACCATGATCATGAGTTACCAAGTGATGGACAATCATTTAAGAACACAGCTACTGACAATGTCCAAGAATCCACAGATGAAAGCTTTCCGCTATCCCTACAAATGGAGTCTATATCCTTTTAA	2040	0.4176	MLMELPSFYILSTILLQCMLPQSLNCQQVYLNGTVYDCSDNPSAPKGYLCNGIQKSCTSFLVFRSKPPHDNPESIAYLLGSEASTIASINKISRNDKIPSNKSIIVPIFCSCSGNIYQHSTPYTVSKNDTYFELVRETYQGLTTCQALMGQNYYASVNIAVGAQLTVPMLCACPTANLRARGVTSLLVYMVNYGDTVKSIGEAYGVDEQSMREANELPMPPRANSSVMLSALTPILVPLRGKNCKENPDKFYCKCFQELHADGGSKELFCDESHGEKFPSKLVAALGVGIGAGFLCLFLLGYKLYQYIQKKRESIRKEKRFRQNGGYLLQEKFSSYGNGEKAKLFTAEELQRATDNYNRSRFLGQGGYGIVYKGMLPDGTIVAVKKSKEIERNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSQHIHRQDHELSLPWDSRLRIACEVAGAVAYMHFSASVPIFHRDIKPTNILLDSNYSAKVSDFGTARSVPQDKTHLTTVVGGTFGYIDPEYFQSSQFTDRSDVYSFGVVLVELITGRKPISFLEEDEGQNLIAEFISLMKENQLSQFLDARVVKEARIDDILAIANLAMRCLRLNGKKRPTMKEVSAELEALRKVQSSLQINHDHELPSDGQSFKNTATDNVQESTDESFPLSLQMESISF*	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g01008	679	ProSitePatterns	Protein kinases ATP-binding region signature.	363	386	IPR017441	GO:0005524
	Rops8g01008	679	SMART	serkin_6	357	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g01008	679	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	107	636	IPR045274	GO:0007166
	Rops8g01008	679	MobiDBLite	consensus disorder prediction	642	668	-	-
	Rops8g01008	679	SMART	LysM_2	122	168	IPR018392	-
	Rops8g01008	679	SMART	LysM_2	188	238	IPR018392	-
	Rops8g01008	679	SMART	LysM_2	70	107	IPR018392	-
	Rops8g01008	679	Coils	Coil	620	640	-	-
	Rops8g01008	679	Pfam	LysM domain	189	217	IPR018392	-
	Rops8g01008	679	Pfam	Protein kinase domain	357	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g01008	679	FunFam	Wall-associated receptor kinase 2	328	432	-	-
	Rops8g01008	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	478	490	IPR008271	GO:0004672\|GO:0006468
	Rops8g01008	679	Gene3D	Phosphorylase Kinase; domain 1	330	432	-	-
	Rops8g01008	679	ProSiteProfiles	Protein kinase domain profile.	357	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops8g01008	679	Gene3D	Transferase(Phosphotransferase) domain 1	433	653	-	-
	Rops8g01008	679	CDD	STKc_IRAK	363	630	-	-
	Rops8g01008	679	FunFam	Wall-associated receptor kinase 2	433	648	-	-
	Rops8g01008	679	SUPERFAMILY	Protein kinase-like (PK-like)	341	627	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g01008	Rops-Chr8	21282167	21283892	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g01008	277	631	Receptor kinase-like Gene Family	AT1G16130	56.704	1.11e-139	425

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Rops8g01008		Pkinase	4.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g01008	-		-	gmx:100795455	1098.19