Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01007 ATGAGTGATCAAATGGCTTCAGGGAGCAATGCTGTCTTTTCTATTCCTCAATTTTCTGGGGAAAATTATCACATATGGGTTGTCAAAATGAGATCATGTTTGAAGTCTCTTGGCTTATGGGAGTATGTTGATGAAGACAAGCAAGTTCCACCATTGAGAACTAATCCAACAATAGCTCAAATGAAGCAACATGAAGAGGAGAAGTTGAAGAGGGAGAAAGTTGTTAGCTGTTTGCACTCAGCCTTGACAGATGACGTGTTCACAAGCATTATGCATCTGGAAACAGCCAAGCAAATATGGGATGAACTGAATGAAAGGTATGCAGGTGATGAAAGGGTAAAGTCCATCAAGCTATTGACTCTTAAAAGAGAGTTTGAAATGCTAAAAATGAAGGAGAATGAATCTGTGAAGGAGTACACCTCAAAGTTGTCCCACTTGGTGAACCAAATGAGGTTGTATGGTGAGGTTGTGCAAGACAACAAGGTAGTAGAAAAGATGCTGATCAGCCTACCAGAAAAATTTGAAGCTAAAGTTGTTGTCATTGAAGAGTCATGTGATCTCAAGACACTAACTATTTCTGAGACGGTCAGTAAATTGCAAGCTCAAGAACAAAGGATTTCCATGAGAATGGATGATGTGACTGAAGGTGCATTTCAAGATAGATATAAGGGGAAGCAATCTGGTCAGAAGGATCAAAAGAAGCAAAATTACAAAAAATGGGGCCATCAAAAAGGCAAAAATAGGGTGGATGGGAGTTCAAGTGAATCTACTGCAAAGGACAAGTTTCCTCCTTGTCTAACTTGCAAAAGGACAAACCACATGACAAAAGATTGTTGAGACATGTTAATGGAGCTTCACTACCTTTACATTCTCTCCATAATCCTGCTATCATATCTGTTTCCTCATTCAATCAACTGCCAACAAGTATATCTTAACACCTCTGTTACTAACTGCTCTGACAACCCTACTGCACCAAAAGGATACCTATGCAATGGCCATCAAAAGTCATGCACTTCGTTTTTAGTTTTCAGGTCCAAACCTCCCTATGATAACCCTGTCAGCATCGCCTACCTTCTTGGTTCTGAAGCATCTACCATAGCCTCAATCAACAATATCTCAAGAAATGACAAGATTCCTTCCAATAAAACAATCACTGTCCCTATCTCTTGTTCATGTTCTGGAAACATCTATCAGCATAACACCTATTACACTGTCATCAAGAATGACACCTATTTTAAGTTGGTAAACGAAACTTACCAAAGCCTCACCACCTGCCAGGCATTGATGGGTCAGAATTACTATGCCTCTGTGAACATTGCAATTGGTGCTGAGCTCACAGTTCCAGTACTATGTGCTTGTCCCACCACAAATCAGACGACAAGAGGAGTCACCTCCTTGCTGGTTTACCCTGTGAACAATGGTGACACAATTAAGTCTATAGGAGAGGCTTATGGTGTTGATGACCAAAGTATGCTAGAGGCCAATGGGTTGGCAGTGTCACCAAGTGCTAACAGTCGCATCACCATCTCTGACATGACACCTATCTTAGTTCCTCTTAGAGGCAAGAGTTGCAAAGAGGACCCGGATAGTTTCTATTGTGTCTGTTCCAAGGGAACGCTTGCGGATGGAAGCTCCGAGAGGCTTTATTGTGATGAATCTGATGGTCAAAGATTTCCTGCCAAATTGGTTGCTTCATTAGGTATTGGCATCGGTGCAGGCTTTCTGTGTTTGTTTCTTTTGGGTTACAGGTTATATCAATACATACATAAAAAGAGAGAGAGTGTTCGCAAGGAAAACCTGTTCAGGCAAAACGGTGGCTACTTGTTACAAGAGAAGTTCTCTTTTTATGGAAATGGAGAAAAGGCAAAGCTTTTTACAGCAGAGGAGCTGCAAAGAGCAACAGATAACTACAACCGCAGTAGGTTTCTTGGTCAGGGTGGCTATGGCATGGTGTATAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAGAAGTCCAAAGAGATTGAAAGGAACCAGATAGAGACTTTTGTGAATGAAGTGGTAATTTTATCCCAGATCAACCACAGGAACATTGTCAAACTCTTGGGTTGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATATATTCCCAATGGAACTCTTTCCCAGCATATCCATAGGCAAGACCATGAGTTGTCCCTTCCATGGGACAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGGGCAGTGGCATATATGCATTTTTCTGCTTCTGTTCCCATCTTTCACAGAGACATCAAACCCACCAACATACTCCTAGACAGTAACTACAGTGCCAAAGTGTCTGATTTTGGAACATCAAGATCAGTTCCACAAGATAAGACTCACTTAACCACAGTTGTAGGAGGAACTTTTGGGTACATAGACCCTGAATATTTCCAGTCCAGTCAATTTACAGATAGGAGTGATGTATATAGTTTTGGGGTTGTGCTTGTAGAGCTTATAACTGGGAGAAAGCCCATTTCATTCTTAGAGGGACATGAGGGTCAGAATCTGATTGCAGGATTCATTTCTTTGATGAAGGAGAACCAACTTTCTAAAATTTTAGATGCAAGAGTGGTCAAGGAAGCAAGGATAGATGACATTCTTGCCATTGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAAAGGCCAACAATGAAAGAGGTTTCAGCGGAATTAGAAGCACTGACAAAGGTACAAAGTTCCTTACAAATCAACCATGATCATGAGTTACAAAGTGATGGACAATCATTTAAGCATACAACTACTGACATAGTCCAAGAATCCACAGAGGAAAGCTTTCCACTATCCCTACAAATGGAGTCTATATCCTATTAA 2880 0.4094 MSDQMASGSNAVFSIPQFSGENYHIWVVKMRSCLKSLGLWEYVDEDKQVPPLRTNPTIAQMKQHEEEKLKREKVVSCLHSALTDDVFTSIMHLETAKQIWDELNERYAGDERVKSIKLLTLKREFEMLKMKENESVKEYTSKLSHLVNQMRLYGEVVQDNKVVEKMLISLPEKFEAKVVVIEESCDLKTLTISETVSKLQAQEQRISMRMDDVTEGAFQDRYKGKQSGQKDQKKQNYKKWGHQKGKNRVDGSSSESTAKDKFPPCLTCKRTNHMTKDC*DMLMELHYLYILSIILLSYLFPHSINCQQVYLNTSVTNCSDNPTAPKGYLCNGHQKSCTSFLVFRSKPPYDNPVSIAYLLGSEASTIASINNISRNDKIPSNKTITVPISCSCSGNIYQHNTYYTVIKNDTYFKLVNETYQSLTTCQALMGQNYYASVNIAIGAELTVPVLCACPTTNQTTRGVTSLLVYPVNNGDTIKSIGEAYGVDDQSMLEANGLAVSPSANSRITISDMTPILVPLRGKSCKEDPDSFYCVCSKGTLADGSSERLYCDESDGQRFPAKLVASLGIGIGAGFLCLFLLGYRLYQYIHKKRESVRKENLFRQNGGYLLQEKFSFYGNGEKAKLFTAEELQRATDNYNRSRFLGQGGYGMVYKGMLPDGTIVAVKKSKEIERNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEYIPNGTLSQHIHRQDHELSLPWDSRLRIACEVAGAVAYMHFSASVPIFHRDIKPTNILLDSNYSAKVSDFGTSRSVPQDKTHLTTVVGGTFGYIDPEYFQSSQFTDRSDVYSFGVVLVELITGRKPISFLEGHEGQNLIAGFISLMKENQLSKILDARVVKEARIDDILAIANLAMRCLRLNGKKRPTMKEVSAELEALTKVQSSLQINHDHELQSDGQSFKHTTTDIVQESTEESFPLSLQMESISY* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01007 958 ProSiteProfiles Protein kinase domain profile. 636 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01007 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 757 769 IPR008271 GO:0004672|GO:0006468
Rops8g01007 958 Pfam Protein kinase domain 636 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01007 958 Pfam LysM domain 468 498 IPR018392 -
Rops8g01007 958 SMART serkin_6 636 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01007 958 MobiDBLite consensus disorder prediction 220 259 - -
Rops8g01007 958 Gene3D Transferase(Phosphotransferase) domain 1 712 933 - -
Rops8g01007 958 FunFam Wall-associated receptor kinase 2 607 711 - -
Rops8g01007 958 ProSitePatterns Protein kinases ATP-binding region signature. 642 665 IPR017441 GO:0005524
Rops8g01007 958 FunFam Wall-associated receptor kinase 2 712 929 - -
Rops8g01007 958 SUPERFAMILY Protein kinase-like (PK-like) 620 906 IPR011009 -
Rops8g01007 958 SMART LysM_2 347 386 IPR018392 -
Rops8g01007 958 SMART LysM_2 467 509 IPR018392 -
Rops8g01007 958 SMART LysM_2 401 447 IPR018392 -
Rops8g01007 958 CDD STKc_IRAK 642 909 - -
Rops8g01007 958 MobiDBLite consensus disorder prediction 220 255 - -
Rops8g01007 958 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 278 912 IPR045274 GO:0007166
Rops8g01007 958 Pfam gag-polypeptide of LTR copia-type 70 206 - -
Rops8g01007 958 Gene3D Phosphorylase Kinase; domain 1 610 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01007 Rops-Chr8 21265446 21276156 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01007 523 928 Receptor kinase-like Gene Family AT1G69730 52.644 3.10e-134 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops8g01007 Pkinase 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01007 - - gmx:100795455 1064.29