Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g01006 ATGGAGCTTCACTACCTTTGCATTCTCTCCACAATCTTCCTCTTATATCTGTTTCCTCAGTCAATCAACTGTCAACAAGTATATCTTAACACCACTGTCACTGACTGCTCTAACAACCCTTCTGCCCCAAAAGGATATCGCTGCAATGACATTCAAAAGTCATGCACTTCCTTCTTAGTTTTCAGGTCAAGGCCTCCCTATGATAACCCTGTAAGCATTGCCTACCTTCTTGGTTCTGAAGCATCTACCATAGCCTCAATCAGTAATATCTCAAGAAATGACAAGATTCCTTCCAATAAACCAATCACTGTCCCCATCTCTTGTTCATGTTCTGGAAATATCTATCAGCATAACACCCCTTACATTGTCAGCAAGAATGACACATACTTCCAGTTGGTGAACGAGACTTACCAAGGCCTCACCACATGCCAGGCATTGATGGGTCAAAATTACTATGCGTCTGATAACATTGAAGTTGGTGCTGAGCTCACAGTTCCAGTACTATGTGCTTGTCCCACCACAAACCAGACGGCAAGAGGGGTCACCTCCTTGCTGGTTTACTCGGTGAACAATGGTGACACGACTAAGTCCATAGGAGAGGCTTATGATGTTGATGAACAAAGTATGCTAGAGGCCAATGGGTTGCCAGTACCACCAAGTGCAAACAGCAGCATCACCATATTTGCCATGACGCCCATCTTAGTTCCTCTTAGAGGCAAGAATTGCAAAGAGGACCCGGATAGTTTCTATTGTGTCTGTTCCAAGGGAACGCTTACGGATGGAAGCTCCGACAGGCTTTATTGTGATGAATCTGATGGTATTGGCATTGGTGCAGGCTTTCTGTGTTTGTTTCTTTTGGGTTACAGGATATATCAATACATACAGAAAAAGAGAGCAAGTATTCGCAAGGAAAAGCTGTTCAGGCAAAACGGTGGCTACTTGTTACAAGAGAAGTTCTCTTCTTATGGAAATGGAGAAAAGGCAAAGCTTTTTACAGCAGAGGAGCTGCAAAGAGCAACAGATAACTACAACCGGAGTAGGTTTCTTGGTCAGGGTGGCTATGGCATGGTGTATAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAGAAGTCAAAAGAGATCGAAAGGAACCAGATAGAGACTTTTGTGAATGAAGTGGTCATTTTATCCCAGATGAACCACAGGAAAACTCTTGGGTTGTTGTCTTGA 1215 0.4337 MELHYLCILSTIFLLYLFPQSINCQQVYLNTTVTDCSNNPSAPKGYRCNDIQKSCTSFLVFRSRPPYDNPVSIAYLLGSEASTIASISNISRNDKIPSNKPITVPISCSCSGNIYQHNTPYIVSKNDTYFQLVNETYQGLTTCQALMGQNYYASDNIEVGAELTVPVLCACPTTNQTARGVTSLLVYSVNNGDTTKSIGEAYDVDEQSMLEANGLPVPPSANSSITIFAMTPILVPLRGKNCKEDPDSFYCVCSKGTLTDGSSDRLYCDESDGIGIGAGFLCLFLLGYRIYQYIQKKRASIRKEKLFRQNGGYLLQEKFSSYGNGEKAKLFTAEELQRATDNYNRSRFLGQGGYGMVYKGMLPDGTIVAVKKSKEIERNQIETFVNEVVILSQMNHRKTLGLLS* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g01006 404 SUPERFAMILY Protein kinase-like (PK-like) 327 402 IPR011009 -
Rops8g01006 404 SMART LysM_2 120 166 IPR018392 -
Rops8g01006 404 SMART LysM_2 186 236 IPR018392 -
Rops8g01006 404 Gene3D Phosphorylase Kinase; domain 1 316 404 - -
Rops8g01006 404 ProSitePatterns Protein kinases ATP-binding region signature. 349 372 IPR017441 GO:0005524
Rops8g01006 404 ProSiteProfiles Protein kinase domain profile. 343 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g01006 404 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 397 - -
Rops8g01006 404 Pfam LysM domain 187 217 IPR018392 -
Rops8g01006 404 Pfam LysM domain 121 166 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g01006 Rops-Chr8 21254032 21255624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g01006 12 402 Receptor kinase-like Gene Family AT2G23770 29.782 6.90e-43 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Rops8g01006 PK_Tyr_Ser-Thr 3.8e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g01006 - - vun:114186184 624.78