Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00984 ATGGAATTCGATGCTGCAATTCCTATGTCTCCAGAAGATGCAATGTGGCAAATGAACTTGAGGTCAAGCGAAACAATGGAATCAGGATCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAATAGGAAGCTGGCTATTGCCACTGCACGGATGAAAGGCGAGTTCCCTGAAAGGATAGGGCAGCCAGAATGTCAGTACTATCTGAAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCAAAAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTACCCACTCCGCCCAAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAATTTGGGAATACTTGCAAATTTCACCATCCTCAACCAAGTAATATGGTGCTTTCAATGCGGAGTTCTCCAATTTATCCCACCATCCAATCTCCAACTACACCAGGTCAGCAGTCATATGCGGCAGGAATTACTAATTGGTCTAGTTCATCCTTTATTCCTAGTCCACGCTGGCAAGGCCCTTCAAGTTATGCACCCTTAATTCTACCTCAGGGAGTGGTTTCGGTGCCTGGATGGAATGCATACAATGGTCAAATGGGATCAGACAGTCCACAGCAAACAATGGGAAATGATCAAACCTACGGAACGTCTCGCCAAGATGAACCAGCAAATGCAGGATCCCCAGGGGCATATTCTCAATTCCGTTCTGGCTCTGTTCCTGTAGGATTCTATGCTTTGCAGAGGGAGAACATATTTCCTGAAAGACCCGATCAGCCTGAATGCCAGTTCTACATGAAGACTGGAGATTGCAAGTTCGGTGCAGTCTGTCGTTTCCATCATCCACGTGAGAGGGTGATTCCCACTCCTGACTGTGTCTTGAGTCCTATTGGCCTTCCTTTGCGTCCTGGAGAACCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATATATCTTCATCACCTTCAGCTGATGCTCCAGGACGGCGTCTGATGGGCTCTTCATCGGGAACTGCTTCATTAAATTTATCATCCGAAGGACTTGTTGAGTCAGGCTCAGCAAAGCCAAGGAGGCTTTCCTTATCAGAGACTAGACAGATTCCTCCTGGTGATGATAACATTGATGATGAGGGATAA 1269 0.4523 MEFDAAIPMSPEDAMWQMNLRSSETMESGSYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPKDKAGIAGRVALNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSSPIYPTIQSPTTPGQQSYAAGITNWSSSSFIPSPRWQGPSSYAPLILPQGVVSVPGWNAYNGQMGSDSPQQTMGNDQTYGTSRQDEPANAGSPGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERVIPTPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISSSPSADAPGRRLMGSSSGTASLNLSSEGLVESGSAKPRRLSLSETRQIPPGDDNIDDEG* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00984 422 ProSiteProfiles Zinc finger C3H1-type profile. 35 62 IPR000571 GO:0046872
Rops8g00984 422 SUPERFAMILY CCCH zinc finger 39 62 IPR036855 GO:0046872
Rops8g00984 422 SMART c3hfinal6 79 106 IPR000571 GO:0046872
Rops8g00984 422 SMART c3hfinal6 282 309 IPR000571 GO:0046872
Rops8g00984 422 SMART c3hfinal6 328 355 IPR000571 GO:0046872
Rops8g00984 422 SMART c3hfinal6 125 152 IPR000571 GO:0046872
Rops8g00984 422 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Rops8g00984 422 SUPERFAMILY CCCH zinc finger 285 311 IPR036855 GO:0046872
Rops8g00984 422 ProSiteProfiles Zinc finger C3H1-type profile. 282 310 IPR000571 GO:0046872
Rops8g00984 422 SUPERFAMILY CCCH zinc finger 128 153 IPR036855 GO:0046872
Rops8g00984 422 SUPERFAMILY CCCH zinc finger 331 355 IPR036855 GO:0046872
Rops8g00984 422 PANTHER PROTEIN PHOSPHATASE RELATED 16 374 - -
Rops8g00984 422 MobiDBLite consensus disorder prediction 224 250 - -
Rops8g00984 422 MobiDBLite consensus disorder prediction 366 422 - -
Rops8g00984 422 MobiDBLite consensus disorder prediction 377 393 - -
Rops8g00984 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 152 IPR000571 GO:0046872
Rops8g00984 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 309 IPR000571 GO:0046872
Rops8g00984 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 330 355 IPR000571 GO:0046872
Rops8g00984 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 61 IPR000571 GO:0046872
Rops8g00984 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Rops8g00984 422 MobiDBLite consensus disorder prediction 224 258 - -
Rops8g00984 422 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872
Rops8g00984 422 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Rops8g00984 422 Gene3D - 112 160 - -
Rops8g00984 422 FunFam Zinc finger nuclease 2 33 110 - -
Rops8g00984 422 ProSiteProfiles Zinc finger C3H1-type profile. 79 107 IPR000571 GO:0046872
Rops8g00984 422 ProSiteProfiles Zinc finger C3H1-type profile. 328 356 IPR000571 GO:0046872
Rops8g00984 422 FunFam CCCH type zinc finger protein 280 368 - -
Rops8g00984 422 Gene3D - 32 111 - -
Rops8g00984 422 Gene3D - 281 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00984 Rops-Chr8 20956484 20966280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00984 15 410 C2H2 Transcription Factor Family AT3G02830 64.750 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops8g00984 zf-CCCH 5.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00984 - - gmx:100786261 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00984 8 20956484 20966280 Rops8g00984 8 20956484 20966280 ECH