Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00979 ATGGGGGTGATAGTTGAAAACGTTGACGAAAACGACGACGTTTTGGTTCCGCCGCCGAACTTCTCCATGGTCGACGATTCCATTTACCGATCAAGTTTGCCAAGTCCTTCCAATTTCCCTTTCCTTCAAACCCTAAACCTTCGTTCCGTCATATATTTGTGTCCTGAGCCATATCCAGAAGAAAGTTTAGAGTTCCTTCGGTCACAGAATATTCGACTTTTTCAATTTGGAATTGAGGGGAAAACGGAAGTTTCTTTGCCTATTCTCAGGGATTCTATCATGGCTGCTCTGAAAGTTTTGATTGATGTGAGAAATCACCCAGTTTTGATCCATTGCAAACGAGGAAAGCATAGAACTGGTTGCGTCGTTGGTTGCTTTCGAAAACTGCAGAATTGGTGCTTGTCTTCTGTGTTTGAAGAGTATCAGCAATTTGCTGGTGTTAAATCCAGGACAGCGGATTTAACATTCATAGAAATGTTTGACATCTTGAGCTTGAGGCAGTGCCTTTACAGCATCATCTACCAGTACCAAGGATATGGTTCAAAGAAGCGTCGCTTGTTGTATAAAGAGGAGAATTTACAGAAGCCCCGACTGACATCGTTTTAG 606 0.4257 MGVIVENVDENDDVLVPPPNFSMVDDSIYRSSLPSPSNFPFLQTLNLRSVIYLCPEPYPEESLEFLRSQNIRLFQFGIEGKTEVSLPILRDSIMAALKVLIDVRNHPVLIHCKRGKHRTGCVVGCFRKLQNWCLSSVFEEYQQFAGVKSRTADLTFIEMFDILSLRQCLYSIIYQYQGYGSKKRRLLYKEENLQKPRLTSF* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00979 201 FunFam probable tyrosine-protein phosphatase At1g05000 14 164 - -
Rops8g00979 201 Gene3D Protein tyrosine phosphatase superfamily 14 164 IPR029021 -
Rops8g00979 201 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 173 - -
Rops8g00979 201 ProSiteProfiles Dual specificity protein phosphatase domain profile. 20 169 IPR020422 GO:0006470|GO:0008138
Rops8g00979 201 PRINTS Plant and fungal dual specificity phosphatase signature 71 85 IPR020428 GO:0016791
Rops8g00979 201 PRINTS Plant and fungal dual specificity phosphatase signature 52 65 IPR020428 GO:0016791
Rops8g00979 201 PRINTS Plant and fungal dual specificity phosphatase signature 88 102 IPR020428 GO:0016791
Rops8g00979 201 PRINTS Plant and fungal dual specificity phosphatase signature 15 32 IPR020428 GO:0016791
Rops8g00979 201 CDD PFA-DSP_Siw14 15 161 - -
Rops8g00979 201 ProSitePatterns Tyrosine specific protein phosphatases active site. 110 120 IPR016130 GO:0016311|GO:0016791
Rops8g00979 201 Pfam Tyrosine phosphatase family 15 162 IPR004861 -
Rops8g00979 201 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 162 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00979 Rops-Chr8 20917574 20919846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00979 1 197 Protein tyrosine phosphatase (PTP) family AT3G02800 68.020 3.40e-104 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00979 K18045 - gmx:100787713 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00979 8 20917574 20919846 Rops8g00979 8 20917574 20919846 ECH