Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00972 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCATTCGCTGATGCAGTGGTCCAGATTTACTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGCATTGAATCTTCAGACCTCAATTTCTCAAGATACGGCGACACCTTTTTTGAGGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACAACCAAGCCTGATGAGGGGGAACGCCATCCTTACTCCATAATAGAGTATGAGGCAAAGCGTGAAGTCATCTTGCCATCTGTAATCTACATACAAAAGATTCTGAGGAGAAGGCCATTCCTCATCAAGAACCTTGAAAATGTCATGCGAAGGTTCCTTCAGTCCTTGGAACTTTTCGAGGAAAATGAGAGGAAGAAGTTGGCAATCTTCACCGCACTTGCATTCTCCCAGAAGCTATCTGGTCTCCCACCGGAGACTGTGTTCCAACCACTTCTTAAAGATAATCTTGTGGCAAAAGGGCTAGTTCTGACATTTATGACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCGATTCTGAAACGGGGAAAAGTAGAGGATAATCTTTTGGTCTTTTTCCCCCCTGCAAAAAGATCTAATGAGTCTTTCTCTGAGCATTTCAGCAAGGAAGGACTGGTGGCATTGGTGGAGTACAATGACAAGAAAATATTTGAGGTGACACTTAAGGAAATGAAGTCTGCTTTAACAACACAGATAACAGAGGAGGCTGATATATCTGAAGTCATTGAGACTGTAAAGCTGCGAGTTAAAGATGCTAAATTGCCAGACATTGAGGTTGTGCGGGTCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCAGGGAAAAATCAGCAACAGAATGCAAATGCGGCCTTGCGCCAGGTAAAAACTTGGGCAGAACTGTTAAATACGTTCTGCACCAGTGGGAAACTTGAGCTGGAGCTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAGCTGTTCCCTGAGATTATTAGATCTCTTTATGACCAGGATGTGCTGGCTGAAGACACCATTCTGCATTGGTTCCGAAAAGGAACAAACACCAAGGGCAGACAAACCTTTGTGAAGGCACTGGAACCCTTTGTTAATTGGCTGGAGGAAGCTGAAGAGGAGGAATAA 1236 0.445 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFADAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIEYEAKREVILPSVIYIQKILRRRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFMTDFFKEYLIDNSLDDLISILKRGKVEDNLLVFFPPAKRSNESFSEHFSKEGLVALVEYNDKKIFEVTLKEMKSALTTQITEEADISEVIETVKLRVKDAKLPDIEVVRVLWDVLMDAVQWSGKNQQQNANAALRQVKTWAELLNTFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00972 411 Coils Coil 121 141 - -
Rops8g00972 411 Gene3D - 242 411 - -
Rops8g00972 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 2 411 - -
Rops8g00972 411 SMART 542_3 325 410 IPR003307 GO:0005515
Rops8g00972 411 SUPERFAMILY ARM repeat 253 408 IPR016024 -
Rops8g00972 411 Coils Coil 406 411 - -
Rops8g00972 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
Rops8g00972 411 CDD W2_eIF5C_like 217 404 IPR043510 -
Rops8g00972 411 FunFam ARM repeat superfamily protein 243 411 - -
Rops8g00972 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00972 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 3.82e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00972 - - gmx:100782537 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00972 8 20803416 20808535 Rops8g00972 8 20803416 20808535 ECH