Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00969 ATGGCCACTCACAAGTTACTACTCTATTGTGGAGTGTCACTCTTCATTCTTTTGTTTGGTCAATGGATCTTTGTCGAAGCTGCCCCTTCAAGCTCTCTTATCACACAACTCCCTGGTTTTGATGGCAATTTCCCCTCCAAGCACTACTCCGGGTATATAAATACTGATGGAAATGGTGAGAGTGGGAAGAACTTGTTCTACTACTTTGTTAGCTCAGAAAGAAATCCAGTGAAAGACCCAGTTGTCCTATGGCTAAATGGTGGACCAGGTTGCTCCAGCTTTGATGGTTTTGTTTATGAGCATGGACCATTCAACTTTGAGGCTGCAAAAACAAAAGGGAATCTACCCACGTTGCATATCAATCCTTACAGCTGGTCGAAGGTTTCCAATATTATATATTTGGATTCTCCTGCTGGTGTTGGCCTCTCTTACTCAAAGAACTCAAGCAAATATGTTACTGGGGACCTACAAACTGCGTCTGATGCCCATGCTTTCCTCTTAAAGTGGTTTGAGCAATTTCCAGAATTCCTGGCCAATCCATTTTATATTTCTGGGGAGTCCTATGCTGGAGTCTACGTGCCCACTCTAGCATTTGAAGTTGCTAAAGGAATCCGGAGTGGTAGAAAGCCCGTGATTAACTTTAAGGGTTACATGGTTGGGAATGGTGTCACGGACCAAATATTTGATGGCAATGCTCTTATCCCATTTGTGCACGGGATGGGCCTCATATCCGACAGTATCTATGAGGAAGTACAAGCTTCTTGCAAAGGAAACTACTACAATGCTTATTACACCGAGGATGATGATAACATATGCTATAAGAACCTGGAAAAAGTTGATAGGGCTATTGATGGGCTTAATGTGTACGATATACTAGAACCATGCTACCATTTCCCTGAAGAGGATGCAATAGGTAAAGGAAACGGAAGCTTGCCATTGAGTTTCCAGCAATTAGGGGTTACAGAGAGGCCTCTCCCAGTGAGGAAGAGGATGTTTGGTAGAGCTTGGCCCTTTAGAGCACCAGTCAGAGATGGCCCTGTTACATTATGGCCAGAATTGGCTCAAACAAGACATGTCTCCTGTGTTAGTGATGAAGTAGCAACCTCGTGGCTAAACAACGATGCAGTCAGGAAAGCCATTTATGCTGAACGGGAAAATGTGGCTGGACCATGGGAATTATGTACCACGAGGATAAAGTACAATCACAATGCTGGAAGCATGATTCCTTACCACAAGAATCTAACCATGCTAGGCTATAAAGCACTTATCTTCAGTGGTGACCATGATATGTGTGTACCATTCACTGGAAGTGAGGCTTGGACAAGATCTCTAGGATATAAGATTGTAGATGAATGGAGGTCATGGAGCTCTGATAACCAAGTTGCAGGATACTTACAAGCATACGAGAACAACCTAATCTTCCTCACAGTCAAGGGAGCTGGACACACGGTGCCAGAATATAAGCCAAGGGAGGCACTGTATTTTTACAGTCGTTGGTTGGAAGGAAAACCAATATAA 1518 0.4361 MATHKLLLYCGVSLFILLFGQWIFVEAAPSSSLITQLPGFDGNFPSKHYSGYINTDGNGESGKNLFYYFVSSERNPVKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKTKGNLPTLHINPYSWSKVSNIIYLDSPAGVGLSYSKNSSKYVTGDLQTASDAHAFLLKWFEQFPEFLANPFYISGESYAGVYVPTLAFEVAKGIRSGRKPVINFKGYMVGNGVTDQIFDGNALIPFVHGMGLISDSIYEEVQASCKGNYYNAYYTEDDDNICYKNLEKVDRAIDGLNVYDILEPCYHFPEEDAIGKGNGSLPLSFQQLGVTERPLPVRKRMFGRAWPFRAPVRDGPVTLWPELAQTRHVSCVSDEVATSWLNNDAVRKAIYAERENVAGPWELCTTRIKYNHNAGSMIPYHKNLTMLGYKALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRSWSSDNQVAGYLQAYENNLIFLTVKGAGHTVPEYKPREALYFYSRWLEGKPI* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00969 505 FunFam Carboxypeptidase 360 504 - -
Rops8g00969 505 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 489 IPR001563 GO:0004185|GO:0006508
Rops8g00969 505 FunFam Carboxypeptidase 407 502 - -
Rops8g00969 505 Gene3D - 358 505 - -
Rops8g00969 505 FunFam Carboxypeptidase 27 318 - -
Rops8g00969 505 Gene3D alpha/beta hydrolase 26 312 IPR029058 -
Rops8g00969 505 Pfam Serine carboxypeptidase 38 502 IPR001563 GO:0004185|GO:0006508
Rops8g00969 505 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Rops8g00969 505 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Rops8g00969 505 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Rops8g00969 505 PRINTS Carboxypeptidase C serine protease (S10) family signature 472 485 IPR001563 GO:0004185|GO:0006508
Rops8g00969 505 SUPERFAMILY alpha/beta-Hydrolases 34 504 IPR029058 -
Rops8g00969 505 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
Rops8g00969 505 ProSitePatterns Serine carboxypeptidases, histidine active site. 472 489 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00969 Rops-Chr8 20771113 20776034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00969 366 505 Calmodulin-binding Proteins AT2G22960 45.714 5.76e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00969 K16296 - gmx:100790895 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00969 8 20771113 20776034 Rops8g00969 8 20771113 20776034 ECH
Rops8g00969 8 20771113 20776034 Rops4g01560 4 38697514 38699761 PCT