Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00965 ATGGTTCCCGTCGGCGAGCCTTCGACAAATGAACAGGGGATTTTGAATAACTGTGTGTTTAAGTCTATGGGCGAAGAGCCTAAAGCTGCTCAATTGACAATCTCTTATGCTGGCAAAGTTATGGTATTTGATGATTTTCCTGTTGATAAAGTGGAGGAGATAATGCCGTTTGCCCGAAGCCCCCAAAGCCAGAACTCTTTTCTTGATCCAGATTCGACATCTCAATCATTTCATTGTGCTATCACAGGCATGCATAGTCTCCCATCAATGGATTCAAAATAA 282 0.4255 MVPVGEPSTNEQGILNNCVFKSMGEEPKAAQLTISYAGKVMVFDDFPVDKVEEIMPFARSPQSQNSFLDPDSTSQSFHCAITGMHSLPSMDSK* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00965 93 Pfam tify domain 26 58 IPR010399 -
Rops8g00965 93 SMART tify_2 25 60 IPR010399 -
Rops8g00965 93 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 23 66 IPR040390 -
Rops8g00965 93 ProSiteProfiles Tify domain profile. 25 60 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00965 Rops-Chr8 20732663 20733281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00965 5 59 Tify Gene Family AT1G17380 45.455 2.01e-09 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops8g00965 tify 8.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00965 K13464 - gmx:100527510 62.7734