Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00949 ATGGCTTCTATGAACTTGTTGGGTTTCTCTCTCTCCCCTCAAGAACATCCATCCACTCAAGATCACTCTCAAACTGCACCTTCTCGTTTTGGCTTCAACCCTGATGAAATCTCAGGGACTGATGTACCAGGAGACTGCTTTGATCTCACTTCTGACTCAACTCCTCATTCACTTAACCTTCCTCCTTTTGGCATATATGAAGCATTTCACAGAAATAACAACATCCATGCCACTCAAGATTGGAATAAGGAGAGGTACAACAGCCAAAACTTGCTATTGGGAACTTCATGCAATGACCAAAATATGAACAACAACAACAACCATCAACACCAGCCAAAGCTTGAAAACTTGCTGGGACCACACTCTTTTGGTGATCATGAACAACCAACATATGATGCTAACTGTTCATTAAGCAGCAATAACTCCATTGGGTTGTCCATGATAAAGACATGGCTTAGGAACCAACCACCACAGTCTGAGAACAAGGAAAGTGGTGGCAGTGCTGGAACTATAACTAATGTGCAAACTCTATCACTTTCAATGAGTACTGGTTCACAGTCAAGTTCATCACTACCCCTCCTTCCTACAAATGTGAATGGAGAAAGTTCCTCATCAGATAACAAGCAACCACCCACCACAGTTGCACTTGATAGCACCCAAACTGGAACTATTGACACTGTGCCAAGAAAGTCTATAGACACCTTTGGACAAAGAACTTCTATATACCGTGGTGTAACAAGGCATAGATGGACTGGGAGATATGAGGCTCATCTATGGGATAATAGTTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACTACCACAACAAATTTTCCTATTAGTCACTATGAAAAAGAGTTGGAAGAAATGAAGCACATGACCCGGCAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGTGTAACGAGACATCATCAACATGGTAGATGGCAAGCGAGGATAGGAAGAGTTGCAGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACACAAGAAGAGGCAGCGGAGGCATACGATGTTGCAGCCATCAAATTCCGAGGATTGAGTGCAGTTACAAACTTTGACATGAGCAGATACGATGTTAAGAGCATACTTGAGAGTAGCACTTTACCCATTGGTGGTGCTGCAAAGCGTTTGAAGGATATGGAACAAGTGGAATTGAATGTGGATGGCCATAGAACAAGTGAAGATAACATGAGTTCCCATCTTATTGATGGGATCAATAATCATCATCATCATCATGGTTGGCAACATGCTCTTGCATTCCAACAACCTCAACCTTGTACTAACATGCATTACCCTTATGGACAAAGAATGTGGTGCAAGCAAGAACAAGATTCTGATGTCTCTCACACTTTTTCAGATATTCATCAACTACAGTTAGGGAATAATAATAATACCCACAATTTCTTTCAGTCAAATTCTGGGTTGCATGGTATCATGAGCATGGATTCTGCTTCCATGGATAATAGTTCTGGTTCAAACATTGCACTTTATGGTGGGGATGGTTATGGAGGAGGTGGTGGGGGTTATGTGATTCCCATGGGCACTACTATTAGTACTACTGTTGATGGTAGCCAAAATCAAAGAAGCAATGGTTTTGGTGACAGTGAGATAAAGGCATTTGGTTATGAAAGTGTTTTTGGTTCTACTGATCCTTATCAAGCACATGCAAGGAACTTGTATTATCTTTCTCAGCATCAATCATCTGTAGATGCAGTTAAGGCTAGTGCATATGATCAAGGCTCATCTTGCAATAATTGGGTTCCAACTGCAATTCCAACTCTTGTTGCATCAAGGCCAAGCAATATGGCTATTTTCCCTGGAGCTCCACCCTTCACTTTATTGCATGAATAG 1986 0.4204 MASMNLLGFSLSPQEHPSTQDHSQTAPSRFGFNPDEISGTDVPGDCFDLTSDSTPHSLNLPPFGIYEAFHRNNNIHATQDWNKERYNSQNLLLGTSCNDQNMNNNNNHQHQPKLENLLGPHSFGDHEQPTYDANCSLSSNNSIGLSMIKTWLRNQPPQSENKESGGSAGTITNVQTLSLSMSTGSQSSSSLPLLPTNVNGESSSSDNKQPPTTVALDSTQTGTIDTVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESSTLPIGGAAKRLKDMEQVELNVDGHRTSEDNMSSHLIDGINNHHHHHGWQHALAFQQPQPCTNMHYPYGQRMWCKQEQDSDVSHTFSDIHQLQLGNNNNTHNFFQSNSGLHGIMSMDSASMDNSSGSNIALYGGDGYGGGGGGYVIPMGTTISTTVDGSQNQRSNGFGDSEIKAFGYESVFGSTDPYQAHARNLYYLSQHQSSVDAVKASAYDQGSSCNNWVPTAIPTLVASRPSNMAIFPGAPPFTLLHE* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00949 661 CDD AP2 240 306 IPR001471 GO:0003700|GO:0006355
Rops8g00949 661 ProSiteProfiles AP2/ERF domain profile. 241 304 IPR001471 GO:0003700|GO:0006355
Rops8g00949 661 FunFam AP2-like ethylene-responsive transcription factor ANT 240 306 - -
Rops8g00949 661 Gene3D AP2/ERF domain 241 306 IPR036955 GO:0003700|GO:0006355
Rops8g00949 661 Gene3D AP2/ERF domain 340 400 IPR036955 GO:0003700|GO:0006355
Rops8g00949 661 SUPERFAMILY DNA-binding domain 339 400 IPR016177 GO:0003677
Rops8g00949 661 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 110 485 - -
Rops8g00949 661 Pfam AP2 domain 340 390 IPR001471 GO:0003700|GO:0006355
Rops8g00949 661 Pfam AP2 domain 241 296 IPR001471 GO:0003700|GO:0006355
Rops8g00949 661 FunFam AP2-like ethylene-responsive transcription factor 339 400 - -
Rops8g00949 661 SUPERFAMILY DNA-binding domain 240 306 IPR016177 GO:0003677
Rops8g00949 661 MobiDBLite consensus disorder prediction 1 31 - -
Rops8g00949 661 CDD AP2 339 400 IPR001471 GO:0003700|GO:0006355
Rops8g00949 661 MobiDBLite consensus disorder prediction 180 229 - -
Rops8g00949 661 MobiDBLite consensus disorder prediction 1 45 - -
Rops8g00949 661 MobiDBLite consensus disorder prediction 101 135 - -
Rops8g00949 661 ProSiteProfiles AP2/ERF domain profile. 340 398 IPR001471 GO:0003700|GO:0006355
Rops8g00949 661 PRINTS Ethylene responsive element binding protein signature 380 400 IPR001471 GO:0003700|GO:0006355
Rops8g00949 661 PRINTS Ethylene responsive element binding protein signature 242 253 IPR001471 GO:0003700|GO:0006355
Rops8g00949 661 SMART rav1_2 340 404 IPR001471 GO:0003700|GO:0006355
Rops8g00949 661 SMART rav1_2 241 310 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00949 Rops-Chr8 20525550 20529508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00949 112 562 AP2-EREBP Transcription Factor Family AT5G17430 52.000 4.23e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Rops8g00949 AP2 3.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00949 K09285 - gmx:100797584 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g00949 8 20525550 20529508 Rops8g00949 8 20525550 20529508 ECH