Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00939 ATGCACAAGGTCCACTTTAGGAGTTCTCTTCAGTGTGCAAAAATGGAAGATTCATTGGGAAATTTGATTTCTTATTTGGAAATGGAAGATGAGCAAGATTTCCTGAGAGAGTTTCTTCAAAAGCAAGATTTCTCATCTGAAAATGAAAGTTCCACCCCTTATCCTTGTTCCCAAATTCAAAACAACATTGTTGAAGGTGGTGGTGCCACCAGCCCCACCAATAGTGCTTTGTCTTTTGAGGAGACAAGCTTTGATGGGACTAGAACCTTACAGAAAAGTAACAGTTTCAAATCCATTGTGTCTTTGGGAAGAAGTGCTTCTTCTCCAGTCTCCTACCTTCTTTCTTTTGATAACTCAAGTGTTGAAAGAATCATCCATGAACCTTCTTCTTCACCAAAGCATAATTCATCATTGGGTTCCAGAAAGAGGACTAAAGGGAAAGATGGGTTTGAATGTGAAGCAAGGTTGCACCAAGCAACAAAGAGGGTTAGGTCATCAGATAAAGATCATATAATGGCTGAGAGGAAAAGGAGACAGGAAATGACTCAGAGTATCATAGCACTTTCAGCAATAATACCTGGGTTGAAGAAGATGGACAAGGCTTATGTACTTCATGAAGCTATCAATTACACAAAACAACTTCAAGAGCGTGTTAAAGAATTGGAGAATCAAAACAAAGATAAAAGAGTAGATTCAGCAATATTCATCGGGGAATCTCAAGCTTCCTCAAATAAAAGCACCACCTATTGTGAAACGAACAAAGAATCACCACTTGAGGTTTGTGCAAGAGTCCAAGAGAAGGAAGTACACATTGCAGTTCATTGTGAGAAGCAAAAGGACACGGTGCCCAAAATTCATGTCTTGCTTGAAAAACTGCATCTCTTTGTGACCAGTAGTAGCGTGTTACCATTTGGGACTTCAACTCTTGTAATTAACATTGTTGCTAAGATGGATGATGAATACAACATGAACATGGATGACCTAGTGAAAAAATTGAGAGAATATATATTGGAGGCATATGAAAAGCAATAG 1032 0.3866 MHKVHFRSSLQCAKMEDSLGNLISYLEMEDEQDFLREFLQKQDFSSENESSTPYPCSQIQNNIVEGGGATSPTNSALSFEETSFDGTRTLQKSNSFKSIVSLGRSASSPVSYLLSFDNSSVERIIHEPSSSPKHNSSLGSRKRTKGKDGFECEARLHQATKRVRSSDKDHIMAERKRRQEMTQSIIALSAIIPGLKKMDKAYVLHEAINYTKQLQERVKELENQNKDKRVDSAIFIGESQASSNKSTTYCETNKESPLEVCARVQEKEVHIAVHCEKQKDTVPKIHVLLEKLHLFVTSSSVLPFGTSTLVINIVAKMDDEYNMNMDDLVKKLREYILEAYEKQ* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00939 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Rops8g00939 343 MobiDBLite consensus disorder prediction 125 147 - -
Rops8g00939 343 Gene3D - 156 230 IPR036638 GO:0046983
Rops8g00939 343 Pfam Helix-loop-helix DNA-binding domain 170 215 IPR011598 GO:0046983
Rops8g00939 343 PANTHER BHLH TRANSCRIPTION FACTOR 38 337 - -
Rops8g00939 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 230 IPR036638 GO:0046983
Rops8g00939 343 Coils Coil 204 231 - -
Rops8g00939 343 SMART finulus 171 220 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00939 Rops-Chr8 20331333 20333671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00939 111 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.164 3.64e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g00939 HLH 5.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00939 - - aprc:113863851 377.867