Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00938 ATGGAAGACTTGGTTTCTCACAGGGAAAAGGGTGATGATGATTTCACTAACCAAAACCATATGAGCTCTTTCAATGAAGAAGAAGAGTTCCTCAAAGATATTATTATTCAGCAACCAGTTTTCTCTCCTGAAAATCCTTCTTCTTGCTCTATTCAAAACAACTTTGGTGCTACCATTGTGGACCCTTTTGGTGCTGCAACAGCCACAAGCATCCCCAATAGTGGTTCAAGCTTGGATGGGTATGGCACCCTGCTCAAGAGTTGCAGCAGTTCTAACCACTTCATCACTTTGGACAAACCTCCCTCATGCATTTTGTCTTTTGTTGAACCTGTTTACCACTCTCAGCATCATCACTCTGCTTTGATGTCCTCTAAAAGCAGGCCACGAACAAAGAAAGTTAGAAACTCATCTGAGATAGAATTTCACATAATGGCTGAGAGAAAAAGGAGACTGGAATTGACTAGGAGCATTATAACACTTTCATCCACCATACCCGGCTTGAAAAAGACAGACAAGTCCTATGTACTTCATGAAGCTGTCAAATATGTGAAACAACTTCAAGAACGTGTTAGAGAGTTAGAAAATCAGAACAGAAAGGAACGTGTGGATTCAATAATATTCATGAAGAAAACACAGCTCTGCATAAATGAAGCCACTCACTCTTGTATAAAGCACTCTAATGGTTGCTCTGAATGTATTGAAGAACTCCCCAATGTTGAAGCAACTGTTTTAGAGAAGGAAGTGCTCATTGGAATCCACTGTGAGAAGAAACAAAGGCAGAGTTTCCTCAAAATAATGTCCTTCCTTAATAATCTCCATCTTTCTATAACCAGTACTAGCATATTGCCATTTGGAACTTCCACCGTTAAAATCACCATTATTGCTCAGATGGATGACGAATACAACATGACAATTGATGATCTAGTAAAAACGCTACGACAACATCTATTGAATTTGAAGTCACAGGGCTATGCAAAAGTGATCCATGCTAGCAAATAA 999 0.3934 MEDLVSHREKGDDDFTNQNHMSSFNEEEEFLKDIIIQQPVFSPENPSSCSIQNNFGATIVDPFGAATATSIPNSGSSLDGYGTLLKSCSSSNHFITLDKPPSCILSFVEPVYHSQHHHSALMSSKSRPRTKKVRNSSEIEFHIMAERKRRLELTRSIITLSSTIPGLKKTDKSYVLHEAVKYVKQLQERVRELENQNRKERVDSIIFMKKTQLCINEATHSCIKHSNGCSECIEELPNVEATVLEKEVLIGIHCEKKQRQSFLKIMSFLNNLHLSITSTSILPFGTSTVKITIIAQMDDEYNMTIDDLVKTLRQHLLNLKSQGYAKVIHASK* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00938 332 Pfam Helix-loop-helix DNA-binding domain 142 187 IPR011598 GO:0046983
Rops8g00938 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 201 IPR036638 GO:0046983
Rops8g00938 332 SMART finulus 143 192 IPR011598 GO:0046983
Rops8g00938 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Rops8g00938 332 MobiDBLite consensus disorder prediction 1 20 - -
Rops8g00938 332 Gene3D - 136 206 IPR036638 GO:0046983
Rops8g00938 332 MobiDBLite consensus disorder prediction 1 16 - -
Rops8g00938 332 PANTHER BHLH TRANSCRIPTION FACTOR 55 317 - -
Rops8g00938 332 Coils Coil 176 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00938 Rops-Chr8 20298226 20301355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00938 101 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.556 1.59e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g00938 HLH 5.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00938 - - gmx:100807144 265.003