Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00923 ATGGCCGGCATAGACTTGGGTTCAGCATCACACTTTGTTCATCGCCTTCAATGCCCTGACCTTGAAGATCATGATGAGAACCAAGATCAACAAGATGGCACTAACAGCAACCATGAAGGGCCAGGTCCTGGTGATCTTGTTGCTCGTAGATCAAGAGGTAGACCCGCAGGTTCAAAGAACAGGCCAAAACCACCAGTTATCATCACAAGAGAGAGTGCAAACACACTTAGGGCTCATATCCTTGAAGTTAGTAGTGGTTGTGATGTGTTTGACTCAGTTGCTACCTATGCAAGGAAGCGTCAAAGAGGGATCTGTGTTCTCAGTGGAAGTGGCACAGTCACCAACGTGACCCTCCGGCAACCGGCTTCCGCCGGAGCCGTCGTGACCCTTCATGGAAGATTCGAGATATTGTCTTTGACAGGGTCTTTTCTTCCACCTCCAGCTCCACCAGGTGCTACAAGTTTGAGTGTGTTCCTTGGTGGTGGTCAGGGTCAAGTTGTGGGAGGAAATGTTGTTGGTCCTTTGGTGGCTTCTGGGCCTGTTATTGTTATTGCTTCTTCCTTCACTAATGTAGCATATGAGAGGTTGCCTTTGGATGAAGATGAATCTATTCAGATGCAGCAAGGTCAATCATCTGGTGGTGGTAGTGGTAATGGTGGTGGAGTTAATAACTCTTTTCCTGATCCATCTTCAGGGCTTCCATTCTTCAATTTGCCCCTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGAAACTCTGGTGGAAGGCAATCTTATTGA 783 0.4777 MAGIDLGSASHFVHRLQCPDLEDHDENQDQQDGTNSNHEGPGPGDLVARRSRGRPAGSKNRPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPASAGAVVTLHGRFEILSLTGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESIQMQQGQSSGGGSGNGGGVNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00923 260 SUPERFAMILY AF0104/ALDC/Ptd012-like 73 204 - -
Rops8g00923 260 CDD DUF296 77 159 IPR005175 -
Rops8g00923 260 ProSiteProfiles PPC domain profile profile. 73 210 IPR005175 -
Rops8g00923 260 MobiDBLite consensus disorder prediction 203 228 - -
Rops8g00923 260 MobiDBLite consensus disorder prediction 23 68 - -
Rops8g00923 260 FunFam AT-hook motif nuclear-localized protein 76 203 - -
Rops8g00923 260 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 215 IPR014476 GO:0003680
Rops8g00923 260 Pfam Plants and Prokaryotes Conserved (PCC) domain 77 190 IPR005175 -
Rops8g00923 260 Gene3D - 76 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00923 Rops-Chr8 20050532 20051314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00923 1 257 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 62.081 7.63e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00923 - - gmx:100803960 418.698