Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00916 ATGTTGGAATCCCGTGTGGGAGAACTAACTAGGCCTAATAAGGGCAATTTGGTTCATCCATTAGATCTGTCACAACATCAACATCTCTCTCTCTCTCTCTCTATATCTCTCTTCCTCTTCAGATCAAACACACACAGAGAGCAAAGGTTCTTGCTTCAAGTTCCAGAAATGGGTGTGGCTCAAAACAATGTTGATGTTGAGGATGGAACCTTGGAGATTGGAATGGAATACAGAACTGTTTCTGGGGTTGCTGGACCATTGGTTATTCTTGATAAAGTTAAGGGACCTAAATTTCAAGAGATTGTTAATATTCGCTTAGGGGATGGAACTACTAGGCGTGGACAAGTTCTTGAAGTTGATGGTGAAAAAGCTGTCGTTCAGGTCTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACCGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTATCACTGGACATGCTTGGCCGCATATTTAATGGTTCAGGAAAACCAATTGATAATGGTCCACCGATTTTACCTGAGGCTTACTTGGACATATCAGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAAACTGGAATATCTACAATTGATGTCATGAATTCCATTGCTAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTTAAGAGATTAGAGAAATCTGATAATCTTCTTGAGGATGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTTAAACGTGACTTTGAGGAGAATGGCTCCATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATTACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGCGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTTTCTGCTGCCCGAGAAGAAGTACCAGGTAGACGTGGGTATCCTGGTTACATGTATACTGATCTTGCAACAATATATGAACGTGCTGGAAGAATTGAGGGGCGAAAAGGGTCTATTACACAAATTCCAATTCTAACTATGCCAAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAAATATATATTGACAGGCAGCTGCATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCACTGTCTCGATTGATGAAGAGTGCCATAGGTGAGGGAATGACACGAAGGGATCATGCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATCTGGAATTTTTGGACAAGTTTGAGAGGAAGTTTGTTGCTCAAGGAGCTTATGATACCCGCAATATCTTTCAGTCACTAGATCTTGCATGGACTTTGCTTCGGATTTTCCCTCGTGAGCTTCTCCATCGTATACCAGTTAAGACTCTTGATCTGTACTACAGCAGAGATGCCGGTAACTGA 1635 0.4208 MLESRVGELTRPNKGNLVHPLDLSQHQHLSLSLSISLFLFRSNTHREQRFLLQVPEMGVAQNNVDVEDGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPVKTLDLYYSRDAGN* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00916 544 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 203 433 IPR000194 GO:0005524
Rops8g00916 544 Gene3D - 85 543 - -
Rops8g00916 544 Hamap V-type ATP synthase beta chain [atpB]. 74 542 IPR022879 -
Rops8g00916 544 PIRSF V-ATPsynth_beta/V-ATPase_B 68 544 IPR022879 -
Rops8g00916 544 CDD V_A-ATPase_B 148 441 - -
Rops8g00916 544 CDD ATP-synt_V_A-type_beta_N 76 147 - -
Rops8g00916 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 439 IPR027417 -
Rops8g00916 544 NCBIfam V-type ATPase subunit B 76 542 IPR005723 GO:0033180|GO:0046961|GO:1902600
Rops8g00916 544 ProSitePatterns ATP synthase alpha and beta subunits signature. 424 433 IPR020003 GO:0005524
Rops8g00916 544 CDD ATP-synt_V_A-type_beta_C 443 537 - -
Rops8g00916 544 FunFam V-type proton ATPase subunit B, brain 85 544 - -
Rops8g00916 544 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 61 541 IPR022879 -
Rops8g00916 544 Pfam ATP synthase alpha/beta family, beta-barrel domain 80 146 IPR004100 GO:0046034|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00916 Rops-Chr8 19972046 19979668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00916 56 544 Primary Pumps ATPases(2) AT4G38510 96.115 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00916 K02147 - oeu:111389279 946.421