Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00908 ATGGCTTCCCCTTCTTCCCCAACAGATTCAAACCCTCCCTCCGCAGTGCCTCTCCCTCTTCCGCCACCCACGTCCTCCTCGCGTCGTCTTCCGCCGCCGTGTTGGACTCCGGAGGAAACCGCTGCCCTCATCGACGCTTACCGTGACAAATGGTACTCCCTAGGCCGTACAAACCTCAAAGCCACCCACTGGCAAGAGGTCGCCGACGCCGTCACCGCACGGTGCCCCAACGCCTCTCCCACCGCGAAAACCGCAGTCCAGTGTCGCCACAAGATGGAAAAGCTCCGAAAACGGTACCGTTCCGAGATCCAGCGTCTCCGATCTCTTCCTATTCCACGATCTCGCTCTTCCTCCTCTTGGGTTCACTTCAAATCCATGGATTCCATGGAAAAAGGTCCCTCTCCGAAAACCGAAGAACACGATCACCACCACCACCGTGAAACCCTCGACGATCTCGACGATGACGATCTGTACGAGGAATTCAAGAACGGTCCCGCTGGAGGCGGCAGTTCCAACACAAGGAGCCTCGAGAAATTGTACAGAAACGGACTCGCAGCCTCCGGCGGTGGATCCGGCGGGGGGTTTCGGATCCGGATTCCGACCGGGGTGAGCGTGGCGCAACATGGGTCGTCGAAGTTTTTTGGGAATCAGAAATTGAATAATAACCCTACTGATTCAGGTTCACGAGGGTTCACCAATGGTGGTAGTGGTGGTGGTGGTTCAACTAGGGTTCTTCAAGAGAGGTTAGGGTTAGGGAAAAGGGAAAGGGACCCTGTTGGTGAAATGGTGAGTGCTATTAAGGTTTTGAGAGATGGGTTTGTGAGAATGGAGCAGATGAAGATGGAGATGGCTAGAGAGATTGAAACGATGCGTATGGAGATGGAAATGAAGCGCACTGAGATGATTCTAGAATCACAACAGAGGATTGTGGAGGCTTTTGCTAAAGCTGTTTCTGAGAAGAACAAGAAGAAGAAGGGTAACAATATACCCTCACCTTCACCTTCAGAACCATAG 1014 0.5325 MASPSSPTDSNPPSAVPLPLPPPTSSSRRLPPPCWTPEETAALIDAYRDKWYSLGRTNLKATHWQEVADAVTARCPNASPTAKTAVQCRHKMEKLRKRYRSEIQRLRSLPIPRSRSSSSWVHFKSMDSMEKGPSPKTEEHDHHHHRETLDDLDDDDLYEEFKNGPAGGGSSNTRSLEKLYRNGLAASGGGSGGGFRIRIPTGVSVAQHGSSKFFGNQKLNNNPTDSGSRGFTNGGSGGGGSTRVLQERLGLGKRERDPVGEMVSAIKVLRDGFVRMEQMKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSEKNKKKKGNNIPSPSPSEP* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00908 337 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 10 320 IPR044823 -
Rops8g00908 337 Coils Coil 89 109 - -
Rops8g00908 337 MobiDBLite consensus disorder prediction 214 240 - -
Rops8g00908 337 MobiDBLite consensus disorder prediction 317 337 - -
Rops8g00908 337 MobiDBLite consensus disorder prediction 126 174 - -
Rops8g00908 337 MobiDBLite consensus disorder prediction 1 34 - -
Rops8g00908 337 MobiDBLite consensus disorder prediction 214 243 - -
Rops8g00908 337 Pfam Myb/SANT-like DNA-binding domain 33 129 IPR044822 -
Rops8g00908 337 SMART 118neu2 42 134 IPR006578 -
Rops8g00908 337 ProSiteProfiles Myb-like domain profile. 35 96 IPR001005 -
Rops8g00908 337 ProSitePatterns Rrf2-type HTH domain signature. 179 197 IPR030489 -
Rops8g00908 337 MobiDBLite consensus disorder prediction 129 151 - -
Rops8g00908 337 Gene3D - 35 101 - -
Rops8g00908 337 MobiDBLite consensus disorder prediction 10 30 - -
Rops8g00908 337 FunFam Trihelix transcription factor ASIL2 35 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00908 Rops-Chr8 19883065 19884980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00908 34 129 Trihelix Transcription Factor Family AT3G14180 35.417 5.42e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops8g00908 Myb_DNA-bind_4 5.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00908 - - mtr:11426900 357.836