Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00905 ATGCCTCCGAAAATAGTGAAAAGAGGTGCTGCGGCAAAGAGAGCTAGGGTTTCCTCAAAGGCTTCCATGGAGAATCAGCAGCAACAACCTGAAGCTGAGAAAGTGGTCGCGAAGAATCATGAAGAAAATCCAGTTGTTGATGTTGTGGTGGAGGAGAAGCCTGTTGAGATGAACCAATTCGAACCAGAAACCGTGGCTAATGGGTTGGCTGTGGTGGAAAACAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCCTGAGTATGAACCTGAGGAGTATGGAGGAGTTGACTATGATGAGAAGGAAATTGAGCAAGATGAGGGTCAGGAGGTGGGAGATGAAGTAGAGGAAGAACTTGAAGAGAATGTAGGTGAAGAAGAGGGTGATTCAGGTGATGAAGAAGTAGAATATGTTTATGAAGAAGTTGAGGGTGATGATGAGGATAATGATGATGAGCATGCTGGTGAGGAGAATGAGCATGAGCATATGGGTAATGTGGAGGAAGAGGAACACCATGAAGTTGTAAAGGAGAGGCAGAAGCGGAAGGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACTGAGCATGATCTCAGGAAAGTTTTCAGTAAAGTTGGTGTTATTACTGAAGTCAGACTGTTGATGAATCCTCAGACTAAAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCAAAAAGAGCTGTGGCAGAGCTACAAAATCCAGTGATTAATGGCAAACAATGTGGGGTTACTCCATGTCAGGACAGTGATACTCTCTACTTAGGTAACATTTGCAAGACTTGGAAAAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTGAAAATGTTGAGGATTTGACTTTAGTAGAAGATAGTAACAACGAGGGAATGAACTGTGGATATGCATTTTTGGAATTTTCATCTCGTTCAGATGCTAAGGAAGCCTATGGGCGACTGCAGAAGAGAGATATTGTCTTTGGAGTCGATAAGCCTGCAAAGGTTTCCTTTGCAGACTCCTTTATTGACCTGGGTGATGAAATTATGGGTCAGGTTAAAACTGTATTTATTGATTCACTGCCTCCATCATGGGATGAAGATTATGTCCGGGATCTTCTTAAGAAATATGGGGAGATTGAAAAAATTGAGCTTGCTAGGAACATGCCAGCTGCTCGTAGGAAGAATTATGGATTTGTTACATTTGGTACACATGCTGCTGCTGTGGAATGTGCTGATAAAATTACCAGTGCATGGTTAGGTGATGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCCAGACCTCTTCAGAGAAGCCATGGAAAATATGACCGAAATTCTGGAAGATTGTCAAGGCCTCCACGGAGTCGACCTGCACCACGTAGTCTTCCTGCCCGCATGGTGAGAAGAATTGGAAGTCGTGTTCCACCTGTTAGACCTTCTAGGGTGAAAGATAGACGTCCCGTCTTGTCCATGCCAGTAAGAGCTAGGCCAGTCATTCCTCCAGCCAGATCCCATGTCAGGAGATTGGCTGCACCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGTTCGACGTGAGGATCTGCCGCCTCCAAGAAGTAGAGCTTCTGCAGATCATAGCTCTTCGGTGGCCTCTCGAAGACGTCCATCTTACAGGGATTATCCAGCCCATGGCTCTGGCCACCCTGAGCTGCATAGAAGTACATCTCATGCTGCACCAAGGAGAGGTTATCTGGATGATGGCTATGGTCAAAGACTTGAGAGGCCTCCTCCTCCTCCTCCCCATCTAAGTTACCGTGAAGGACACCTCCGTGATTATGACACACTATCTGGCTCGAAACGTCCTTATACTGCCATAGATGATGTTCCTCCACGGTATGCTGATGCTGGTGCACGCCAATCAAGATCTCGTTTGGACTACGAATATGGAGGTAGTGCTTCACGATATGGAGAGGCTTATGGCGATAGGCTTGGAAGATCTAGTCTGGGATATAGTGGCAGTAGAAGTTCTATATCTATTCAAAATTCACATGGGACATATAGCAGTCAACAGGGCACAGGTTATGGTGGAGGTTCTTTTGGTGGTAGTGATGGGGGTATGTACTCATCAAGTTATGGTGGTGATTACATATCTCGTGGAAGTGATGTGGGTGGCAGCTCGTATTCATCCATGTTTTCTAGCAGGGGTGTGGGTGGTAGTAGCCGTTATATGGGTGGTGGTGGATCTAGGTCTTATTATTGA 2310 0.4463 MPPKIVKRGAAAKRARVSSKASMENQQQQPEAEKVVAKNHEENPVVDVVVEEKPVEMNQFEPETVANGLAVVENNEEEVKESIDEYEKDEHLDLEDNYPEYEPEEYGGVDYDEKEIEQDEGQEVGDEVEEELEENVGEEEGDSGDEEVEYVYEEVEGDDEDNDDEHAGEENEHEHMGNVEEEEHHEVVKERQKRKEFEVFVGGLDKDATEHDLRKVFSKVGVITEVRLLMNPQTKRNKGFAFLRFETVEQAKRAVAELQNPVINGKQCGVTPCQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDSNNEGMNCGYAFLEFSSRSDAKEAYGRLQKRDIVFGVDKPAKVSFADSFIDLGDEIMGQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFGTHAAAVECADKITSAWLGDGDKKAKVRARLSRPLQRSHGKYDRNSGRLSRPPRSRPAPRSLPARMVRRIGSRVPPVRPSRVKDRRPVLSMPVRARPVIPPARSHVRRLAAPAYPKSSMKRDYVRREDLPPPRSRASADHSSSVASRRRPSYRDYPAHGSGHPELHRSTSHAAPRRGYLDDGYGQRLERPPPPPPHLSYREGHLRDYDTLSGSKRPYTAIDDVPPRYADAGARQSRSRLDYEYGGSASRYGEAYGDRLGRSSLGYSGSRSSISIQNSHGTYSSQQGTGYGGGSFGGSDGGMYSSSYGGDYISRGSDVGGSSYSSMFSSRGVGGSSRYMGGGGSRSYY* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00905 769 MobiDBLite consensus disorder prediction 687 707 - -
Rops8g00905 769 SUPERFAMILY RNA-binding domain, RBD 192 275 IPR035979 GO:0003676
Rops8g00905 769 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 361 IPR000504 GO:0003723
Rops8g00905 769 MobiDBLite consensus disorder prediction 747 769 - -
Rops8g00905 769 MobiDBLite consensus disorder prediction 84 190 - -
Rops8g00905 769 MobiDBLite consensus disorder prediction 541 556 - -
Rops8g00905 769 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 127 277 - -
Rops8g00905 769 MobiDBLite consensus disorder prediction 450 511 - -
Rops8g00905 769 MobiDBLite consensus disorder prediction 19 33 - -
Rops8g00905 769 Gene3D - 278 360 IPR012677 -
Rops8g00905 769 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 275 IPR000504 GO:0003723
Rops8g00905 769 SUPERFAMILY RNA-binding domain, RBD 277 442 IPR035979 GO:0003676
Rops8g00905 769 FunFam Heterogeneous nuclear ribonucleoprotein Q 278 360 - -
Rops8g00905 769 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 267 IPR000504 GO:0003723
Rops8g00905 769 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 345 IPR000504 GO:0003723
Rops8g00905 769 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 435 IPR000504 GO:0003723
Rops8g00905 769 Coils Coil 69 92 - -
Rops8g00905 769 CDD RRM_SF 199 270 - -
Rops8g00905 769 MobiDBLite consensus disorder prediction 573 596 - -
Rops8g00905 769 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 456 IPR000504 GO:0003723
Rops8g00905 769 MobiDBLite consensus disorder prediction 96 167 - -
Rops8g00905 769 Gene3D - 161 277 IPR012677 -
Rops8g00905 769 Gene3D - 366 483 IPR012677 -
Rops8g00905 769 MobiDBLite consensus disorder prediction 531 657 - -
Rops8g00905 769 MobiDBLite consensus disorder prediction 168 190 - -
Rops8g00905 769 SMART rrm1_1 198 271 IPR000504 GO:0003723
Rops8g00905 769 SMART rrm1_1 278 357 IPR000504 GO:0003723
Rops8g00905 769 SMART rrm1_1 375 450 IPR000504 GO:0003723
Rops8g00905 769 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 23 729 - -
Rops8g00905 769 CDD RRM_SF 376 442 - -
Rops8g00905 769 MobiDBLite consensus disorder prediction 458 472 - -
Rops8g00905 769 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00905 Rops-Chr8 19859849 19866950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00905 187 442 Eukaryotic Initiation Factors Gene Family AT1G22760 23.704 6.76e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00905 - - gmx:100808583 895.96