Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00895 ATGGCTGAACGGGGATATCTGGTTATCTCTGGTTCTAAAGGAGCTTCAAAGAGCTTCATTGATGAATGCCAAGTTCTGAGAAGTATAAGGCACCGCAACCTTCTCAAGATCATAACTGCTATCTCAAGTGTTGATCATCAAGGTAATGACTTCAAAGCCCTGGTGTTTGAGTTTATGTCTAATGGAAGTCTAGAAGATTGGTTGCATCCTATAAATAATATGCATAACCAGACAAAGACATTGACATTTGTCCAAAGACTGAACATAGCAATTGATGTTGCTTGTGCACTGGAATATCTCCATCACTTCTGTGAAACTCCAATAGTTCATTGTGATATAAAGCCAAGCAATGTACTTCTTGATAATGATATGGTTGCCCATGTTGGTGACTTTGGATTAGCTACATTTCTGTTTGAAGAATCATGTGGTTCTCGCAAACAATCAATGATGTCAGCTAGACAAAGGGCTCTATTGGGTATATCCCTCCAGAGTATGGAATGGGTGGCCACCCTTTTGGTCTGGGAGATGTTTACAGTTATGGGATACTATTGCTAG 555 0.4 MAERGYLVISGSKGASKSFIDECQVLRSIRHRNLLKIITAISSVDHQGNDFKALVFEFMSNGSLEDWLHPINNMHNQTKTLTFVQRLNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESCGSRKQSMMSARQRALLGISLQSMEWVATLLVWEMFTVMGYYC* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00895 184 SMART serkin_6 6 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00895 184 Gene3D Transferase(Phosphotransferase) domain 1 7 177 - -
Rops8g00895 184 ProSiteProfiles Protein kinase domain profile. 1 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00895 184 Pfam Protein kinase domain 16 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g00895 184 SUPERFAMILY Protein kinase-like (PK-like) 13 141 IPR011009 -
Rops8g00895 184 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Rops8g00895 184 PANTHER OS04G0122200 PROTEIN 13 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00895 Rops-Chr8 19608742 19610127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00895 13 178 Receptor kinase-like Gene Family AT3G47090 49.162 7.42e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops8g00895 Pkinase 3.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00895 - - gmx:100785230 261.151