Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00886 ATGGAAGGAGAGAGAGGTGTTCCCAATTACCAGCTTCAAGTTTCATTCACCAACACCCCACAACCACTCAACGAAATGGGTTTTGTTCAATTTGAAGAAAACCAAATCCTTGGCTTGTTGTCACCCTCTTCACAATCTCAATCTTCTCAGCTCTCTCATTCCTTAAACAGTGGTGGCACCGGTAGCACCTCCGCCACTACAACCATCGGATTGAGTCATAATGAACTGGTCACCAGAACATGGAATAACGACCAGGTGGTGGGAACTCTGGATCCCAAGGCTGTTAATGATGAAAATTGCTCTGGAAATGTTAGTGATGGCAACAACCACTCATGGTGGAGGAGTGGAGCCGATGAGAAGAGCAAGGTGAGAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATATAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGGTGCACTCATAGCAACTGTAGGGTGAAGAAGAGGGTTGAACGACTATCAGAGGATTGCCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCCCCCTGTGATGACTCTAATTCATCCGACAATGAATGCTTTACCTCTTTTTAA 660 0.4409 MEGERGVPNYQLQVSFTNTPQPLNEMGFVQFEENQILGLLSPSSQSQSSQLSHSLNSGGTGSTSATTTIGLSHNELVTRTWNNDQVVGTLDPKAVNDENCSGNVSDGNNHSWWRSGADEKSKVRIRRKLREPRFCFQTRSDIDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSDNECFTSF* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00886 219 Pfam WRKY DNA -binding domain 146 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00886 219 SUPERFAMILY WRKY DNA-binding domain 137 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g00886 219 Gene3D WRKY domain 132 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops8g00886 219 MobiDBLite consensus disorder prediction 41 66 - -
Rops8g00886 219 FunFam WRKY transcription factor 57 131 205 - -
Rops8g00886 219 ProSiteProfiles WRKY domain profile. 140 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00886 219 SMART WRKY_cls 145 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops8g00886 219 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 46 206 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00886 Rops-Chr8 19524462 19540551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00886 3 219 WRKY Transcription Factor Family AT2G44745 58.667 1.31e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops8g00886 WRKY 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00886 - - gmx:100800671 336.65