Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g00870 ATGAGCTCAGCTGATGAGTTGTCCCTCAACGGTCAGATCCAGCCCATGAAGTTGTCCACCCATCTGGAACGGCCTCAGGTTCTTGCTCCCTTGTTGGATCTGGAAGAAGAAGACGAGGAAGAAGCTGAGGCGGAGGTGGAGCTGGGGAGGCTCTGGGAGTTGTGGAGAACATGGAAGCTAATTGGAGCAAGATTCTTCAACAAAGCTTACGAGGCATATAATGGCAAACTTCCCCCACCACTGCAAACCGCACGTGACTTGGTGGGCCATGGTACTCATACTCTATCAACCGCTGGGGGCAACTTTGTTCCAGGTGCAAGTGTCTTTGCTGTTGGTAATGGTACTGCAAAGGGTGGGTCCCCAAGAGCCAGAGTTGCAACCTACAAAGTGTGTTGGTCTCTAACCGATGCAGCCAGATGCTATGGTGCTGATGTGTTGGCTGCTATTGACCGAGCCATAAGTGATGGTGTTGATGTTATCTCTGTTTCTGCTGGAGGCCCTGTTGTCGCTGCTAGCACCATAGATAGGGAATTCAGCAGTACTATGACTTTGGGTAACAATCAACAAATCACGGATGCCAGTCTTTTTGTAAACTTACCACCTAACCAGTCCTTTTCTTTGATCCTTTCTACTGATGCTAAACTTGCCAATGTGACACGTCGAGATGCGCATTTGAGTGTGATCTCGGCTTGTACAAATTCCGGGGATGTGGAAATTGGTAGGATGGTTCACTGGTTTGTGGAGGAGAATGGGTTTGGATGGATGGTTGCACTTTGCAATGCTGTTATTGACATGTATGGGAAGTGTGGATGCTTGGAGCAGGCTTGGTGTGTGTTCAATGGCATGAGGAGGAAGAGGTTGATCACGTGGAATACTATGATGGTGGTGTGTGCGAACCATGGGAATGCTGATGATGCCTTCAGTTTGTTTGAATGGATGATTGGTTCTGGGGTTGTGCCTGACTGGGTATCAATTCTGGCACTTCTGGTTGCATATGCTCATAACGGCATGCCAATTCCAAGTAATGATGTTGTTTGGGTAGCACTGCTTGGAGCCTGCAGGATTCATGGTGACGTTGACATGGGGGAAAAGGTTATAAAGACGTTGTTGGAGCTGAAACCAGATGAAGGGGGTTACTATATTCTCCTCCGTGATATCTATGTTGCTGCAGGCAGGACTGTAGAGGCCAATGATATGAGGGAGGTAAGGTCTACTGCTGAAATCTGCAGAAGAAGACATTTCATCACTGGTCCTTTTATTCTTGAATGCTTATCAGATTCAGCCAGATAG 1290 0.4775 MSSADELSLNGQIQPMKLSTHLERPQVLAPLLDLEEEDEEEAEAEVELGRLWELWRTWKLIGARFFNKAYEAYNGKLPPPLQTARDLVGHGTHTLSTAGGNFVPGASVFAVGNGTAKGGSPRARVATYKVCWSLTDAARCYGADVLAAIDRAISDGVDVISVSAGGPVVAASTIDREFSSTMTLGNNQQITDASLFVNLPPNQSFSLILSTDAKLANVTRRDAHLSVISACTNSGDVEIGRMVHWFVEENGFGWMVALCNAVIDMYGKCGCLEQAWCVFNGMRRKRLITWNTMMVVCANHGNADDAFSLFEWMIGSGVVPDWVSILALLVAYAHNGMPIPSNDVVWVALLGACRIHGDVDMGEKVIKTLLELKPDEGGYYILLRDIYVAAGRTVEANDMREVRSTAEICRRRHFITGPFILECLSDSAR* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g00870 429 Gene3D Peptidase S8/S53 domain 59 166 IPR036852 GO:0004252|GO:0006508
Rops8g00870 429 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 336 402 IPR046960 GO:0003723|GO:0009451
Rops8g00870 429 NCBIfam pentatricopeptide repeat 259 285 IPR002885 -
Rops8g00870 429 NCBIfam pentatricopeptide repeat 288 322 IPR002885 -
Rops8g00870 429 Gene3D Tetratricopeptide repeat domain 220 338 IPR011990 GO:0005515
Rops8g00870 429 Pfam PPR repeat family 288 331 IPR002885 -
Rops8g00870 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Rops8g00870 429 Pfam PPR repeat 259 286 IPR002885 -
Rops8g00870 429 Pfam Subtilase family 80 183 IPR000209 GO:0006508|GO:0008236
Rops8g00870 429 SUPERFAMILY Subtilisin-like 58 179 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g00870 Rops-Chr8 19013611 19031547 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g00870 59 225 Subtilisin-like Serine Gene Family AT5G59810 45.794 1.16e-44 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g00870 - - gmx:100793516 277.715